View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_17 (Length: 582)
Name: NF11928_low_17
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 19 - 570
Target Start/End: Original strand, 45141282 - 45141833
Alignment:
| Q |
19 |
ggtttaactattttgaaaattggcctcacataagaacatttctacatgaatttatcctatttctgttgcatgatgaatcaatcttaattttatcataggt |
118 |
Q |
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| T |
45141282 |
ggtttaactattttgaaaattggcctcacataagaacattactacatgaatttatcctatttctgttgcatgatgaatcaatcttaattttatcataggt |
45141381 |
T |
|
| Q |
119 |
tggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagtgaagacattcgtggaaaatggagcatttgtagttatagcaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141382 |
tggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagcgaagacattcgtggaaaatggagcatttgtagttatagcaga |
45141481 |
T |
|
| Q |
219 |
tatcaatgatgaatttggccagcaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagttgaagaa |
318 |
Q |
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| T |
45141482 |
tatcaatgatgaattgggtcaccaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagttgaagaa |
45141581 |
T |
|
| Q |
319 |
acagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatc |
418 |
Q |
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| T |
45141582 |
acagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatc |
45141681 |
T |
|
| Q |
419 |
tgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatc |
518 |
Q |
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| T |
45141682 |
tgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatc |
45141781 |
T |
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| Q |
519 |
cataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccat |
570 |
Q |
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| T |
45141782 |
cataatttgtactgccagtgtagctgcctctgttgctggaaatcgtggccat |
45141833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 105 - 557
Target Start/End: Original strand, 45152011 - 45152465
Alignment:
| Q |
105 |
attttatcataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagtgaagacattcgtggaaaatggagcattt |
204 |
Q |
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| T |
45152011 |
attttatcataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagtgaagacattcgtggaaaatggagcattt |
45152110 |
T |
|
| Q |
205 |
gtagttatagcagatatcaatgatgaatttggccagcaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaa |
304 |
Q |
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| T |
45152111 |
gtagttatagcagatatcaatgatgaattgggtcaccaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagtgatgaaa |
45152210 |
T |
|
| Q |
305 |
aacaagttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaagg------tggtatgtctag |
398 |
Q |
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| T |
45152211 |
aacaagttgaggaaaccgtagcttttgcattggaaaaatatggaaccttagacatcatgttcagcaatgctggaattggaggtgctactgctatgtctat |
45152310 |
T |
|
| Q |
399 |
cagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtg |
498 |
Q |
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|||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||| |
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| T |
45152311 |
cagcatacta----atgatgtaaatgaatttgacaacaccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgttatggtg |
45152406 |
T |
|
| Q |
499 |
gagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctgg |
557 |
Q |
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|| |||||||| ||||||||||||||||| || || ||||| |||| || ||||||||| |
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| T |
45152407 |
gaaagaaaaattcgtggatccataatttgcacggctagtgtggctggctttgttgctgg |
45152465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 9e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 113 - 544
Target Start/End: Original strand, 38255843 - 38256271
Alignment:
| Q |
113 |
ataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagtgaagacattcgtggaaaatggagcatttgtagttat |
212 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |||||| |||||||| || || |||| |||| ||| ||||||||||||||||||||||| || |
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| T |
38255843 |
ataggttggagggtaaggtagctatagtgactggggcagcaagtggaataggagcagaagcagtaaagatatttgtggaaaatggagcatttgtagtcat |
38255942 |
T |
|
| Q |
213 |
agcagatatcaatgatgaatttggccagcaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagtt |
312 |
Q |
| |
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||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||| |
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|
| T |
38255943 |
agcagatatcaatgatgaattgggtcaccaacttgcaacttcaattgggttagacaaagtgagttaccaccactgtgacgtgagagaggagaaacaagtt |
38256042 |
T |
|
| Q |
313 |
gaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaat |
412 |
Q |
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|| |||| || |||||| | ||||| | |||||| ||| ||||||| ||||| ||||| ||||| | | ||| | | ||| ||||||||||||| |
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| T |
38256043 |
gaggaaattgttgctttcacgttggagagatatggtaccttagacatcatgttcagcaatgctggtaacgctggtcctttatct---agcatactagaat |
38256139 |
T |
|
| Q |
413 |
ttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccg |
512 |
Q |
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|| | || ||||||||||||||||||||||| | || ||||||| || ||| |||||||||| ||| ||||| | |||||||| |||||||| || |
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| T |
38256140 |
ttaacctaaatgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtggaaagaaaaatacg |
38256239 |
T |
|
| Q |
513 |
tggatccataatttgtactgccagtgtagctg |
544 |
Q |
| |
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||||| |||||||| || ||||||||||||| |
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| T |
38256240 |
aggatcaataatttgcacagccagtgtagctg |
38256271 |
T |
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