View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11928_low_18 (Length: 580)
Name: NF11928_low_18
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_18 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 197 - 580
Target Start/End: Original strand, 36884991 - 36885375
Alignment:
| Q |
197 |
ttctggctttgaggatgcagtt-gttcaaacggattgcaacaaggagtgccacacctgcagccactagtgttcctccaccaactataagagcaattcctc |
295 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36884991 |
ttctggctttgaggatgcagtttgttcaaacggattgcaacaagtagtgccagacctgcagccactagtgttcctccaccaactataagagcaattcctc |
36885090 |
T |
|
| Q |
296 |
caggacctaattttttcttcttaggcttgggctaacttactaccggaggagcatagttcttgatggcatttgcataagttgtgggtgggtgactaatatt |
395 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36885091 |
caggacctaattttttcttcttaggcttgtgctcacttactaccggaggagcatagttcttgatggcatttgcattagttgtgggtgggtgactaatatt |
36885190 |
T |
|
| Q |
396 |
atgttcaacggataatgtctccgatggagcaggccatggaggagagttgtccgctgcatggaatttattcacaacactcctattttagagtggggggaat |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||| |||||| |
|
|
| T |
36885191 |
atgttcaacggataatgtctccgatggagcaggccatggaggagagttgtccgctgcatggaattcattcccagcaatcctattttagagtggagggaat |
36885290 |
T |
|
| Q |
496 |
gattacgttcaggtgttcacttttgtttgttgaaataaaattaggggagcaaagtcctaatagttgttcgctaaccataaatttt |
580 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||||| || || |||| || |||||||||||| ||||||||||||||| |
|
|
| T |
36885291 |
gattactttcatgtgttcacttttgtttgatgaaataaaatatggtgatcaaactcataatagttgttcactaaccataaatttt |
36885375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 36884680 - 36884862
Alignment:
| Q |
17 |
agagacctctatcaccaataggaagnnnnnnngagagcataattagcattagaaatgaattcacagaaatattaatggcatcctaactcagtgaggtagc |
116 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36884680 |
agagacctctatcaccaataggaagaaaaaaagatagcatgattagcattagaaatgaattcacagaaatattaatggcatcctaactcagtgaggtagc |
36884779 |
T |
|
| Q |
117 |
tagttgattattacacnnnnnnnngtgaatttccaatacaatctcaaattcgtattatttttcaagattttatcaaggtcttct |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36884780 |
tagttgattattacac-aaaaaaagtgaatttcaaatacaatctcaaattcgtattatttttcaagattttatcaaggtcttct |
36884862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University