View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_19 (Length: 563)
Name: NF11928_low_19
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 13404881 - 13405436
Alignment:
| Q |
1 |
gccaatgtcatattgatataacaatagttcaatcatactgaatttgcactttatagctttcttaatttagaaaataaaaatattccctttcaagtgcttt |
100 |
Q |
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| T |
13404881 |
gccaatgtcatattgatataacaatagttcaatcatactgaatttgcacttaatagctttcttaatttagaaaataaaaatataccctttcaagtgcttt |
13404980 |
T |
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| Q |
101 |
accctgatggggtggaaaatatgttactatagaactaattcattcttagcattatttaggattaaaaagtaattttgtgaaagtggaaaatgttattatg |
200 |
Q |
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| T |
13404981 |
accctgatggggtggaaaatatgttactatagaactaattcattcttagcattatttaggattaaaaagtaattttgtgaaagtggaaaatgttattatg |
13405080 |
T |
|
| Q |
201 |
gaacttaattttgtaaaaaatgttttataatgaatctgtgtttgtttggctttggcatttataggtggtaaaagtacaatacttactgtgttgtgcgttg |
300 |
Q |
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| T |
13405081 |
gaacttaattttgtgaaaaatgttttctaatgaatctgtgtttgtttggctttggcatttttaggtggtaaaagtgcaatacttactgcgttgtgtgtag |
13405180 |
T |
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| Q |
301 |
catttggatggcgagctaaaggcactcaaagagcatctactttgaaggatttcattaaaaatggtgctaggtaaatgccatatgctctctctatgtcttt |
400 |
Q |
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| T |
13405181 |
catttggatgtcgagctaaaggcactcaaagagcatctactttgaaggatttcattaaaaatggtgctaggtaaatgccatatgctctctctatgtcatt |
13405280 |
T |
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| Q |
401 |
ctttgattggtgtggtttctttatccatcatgggtggtgtggggagtaaatgaatgttatgttgatgttttcacgaaggaatttctccttgggtagacaa |
500 |
Q |
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| T |
13405281 |
ctttgattggtgtggtttctttatccatcatgggtggtgtggggagtaaatgaatgttatgttgatgttttcacgaaggaatttctccttggttagacaa |
13405380 |
T |
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| Q |
501 |
taaaatttctaagtgatttatattatgggcgaatttggattcctcgttttcttctc |
556 |
Q |
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| T |
13405381 |
taaaatttctaagtgatttatattatgggcgaatttggattccttgttttcttctc |
13405436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 256 - 392
Target Start/End: Complemental strand, 22522570 - 22522434
Alignment:
| Q |
256 |
catttataggtggtaaaagtacaatacttactgtgttgtgcgttgcatttggatggcgagctaaaggcactcaaagagcatctactttgaaggatttcat |
355 |
Q |
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| T |
22522570 |
catttataggtggtaaaagtgcaatacttactgcattgtgtgttgcatttggttgtcgagctaaaggcacgcaaagagcatctactttgaaggatttcat |
22522471 |
T |
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| Q |
356 |
taaaaatggtgctaggtaaatgccatatgctctctct |
392 |
Q |
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| T |
22522470 |
taaaactggttctaggtaaatgccattagctctctct |
22522434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 22522881 - 22522840
Alignment:
| Q |
143 |
ttcttagcattatttaggattaaaaagtaattttgtgaaagt |
184 |
Q |
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| T |
22522881 |
ttcttagcattagttaggatttaaaagtaattttgtgaaagt |
22522840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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