View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11928_low_2 (Length: 1024)
Name: NF11928_low_2
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Original strand, 926048 - 926560
Alignment:
| Q |
19 |
aactggaggacaacttaatacacccaatagcatgatcgttatggcatattgctttgcaacgtag---atacttgcctgccatatttttgatgaagttgat |
115 |
Q |
| |
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|||| ||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |||| ||| | | | | ||||||| ||||||||||| |
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| T |
926048 |
aactcgagaacaacttaatacacccaataacatgatcattatggcatattgctttgcattgtagtagatattcactttctatattttcaatgaagttgat |
926147 |
T |
|
| Q |
116 |
gccttggtctttgctggtgtaaggttccccccagaacttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaagatgaaaggat |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
926148 |
gccttggtctttgctggtgtaaggttccccccagaacttggccactttttcatcagtctgccacaccattacatcatcaaggtcagaaagattaaaggat |
926247 |
T |
|
| Q |
216 |
cggagtgtgatttggttcaaatcgatgatc---tcttctttggcacatggtttggaggaaataaaagtttcttccataacttgtgtttcttttatgagtt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
926248 |
cggagtgtgatttggttcaaatcgatgatctcttcttctttggcacatggtttggaggaaataaaagtttcttccataacttgtgtttcttttatgagtt |
926347 |
T |
|
| Q |
313 |
tatttggatgcattcaacaagtgtttatttttaggctattt----ataaagtcatggagatgnnnnnnnggaagttgcacggaagaaaggtcgaagttgg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
926348 |
tatttggatgcattcaacaagtgtttatttttaggctatttataaataaagtcatggagatgaaaaaaaggaagttgcacggaagaaaggtcgaagttgg |
926447 |
T |
|
| Q |
409 |
gatcaagcaagaaagtgaagtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatga |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
926448 |
gatcaagcaagaaagtgaagtaatggatttcaaggctgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatga |
926547 |
T |
|
| Q |
509 |
agctcacatccat |
521 |
Q |
| |
|
||||||||||||| |
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|
| T |
926548 |
agctcacatccat |
926560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 526 - 805
Target Start/End: Original strand, 927018 - 927297
Alignment:
| Q |
526 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
927018 |
gtgattttagttgttttgtgattcaagagatggcttgtgggatgggtttctaaagagcagaaacaggatggataggcatcactgcatcaattacggtggt |
927117 |
T |
|
| Q |
626 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
927118 |
ctctaatctatagctaagctactagtgtctaataatttgataatttcaacaccatttttatgtatatcatttacatcttcactaatctaccacaatttta |
927217 |
T |
|
| Q |
726 |
tatagctttgatcttcctaggatgcaccttatagacctaagcataagcagcaccttatagagattactcataatataata |
805 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
927218 |
tatacctttgatcttcctaggatgcaccttatagacctaagcataagcagcaccttatagagattactcataatataata |
927297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 935504 - 935740
Alignment:
| Q |
19 |
aactggaggacaacttaatacacccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
935504 |
aactggaggacaacttaatacacccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgcc |
935603 |
T |
|
| Q |
119 |
ttggtctttgctggtgtaaggttccccccagaacttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaagatgaaaggatcgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||| ||| |||||| |
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|
| T |
935604 |
ttggtctttgctggtgtaaggttccccccagaacttggccactttttcatcagtgtgccacaccatgagatcatcgaggtcagaaagattaaaagatcgg |
935703 |
T |
|
| Q |
219 |
agtgtgatttggttcaaatcgatgatctcttctttgg |
255 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
935704 |
agtgtgatttggttcaaatcaatgatctcttctttgg |
935740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 42 - 289
Target Start/End: Original strand, 928391 - 928641
Alignment:
| Q |
42 |
ccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggtt |
141 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||||||| ||| |||||| | | ||| ||| |||||||||||||| | ||| ||||||||||||||| |
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|
| T |
928391 |
ccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaaggtt |
928490 |
T |
|
| Q |
142 |
ccccc---cagaacttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaagatgaaaggatcggagtgtgatttggttcaaatc |
238 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
928491 |
cccaagagcagaacttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatc |
928590 |
T |
|
| Q |
239 |
gatgatctcttctttggcacatggtttggaggaaataaaagtttcttccat |
289 |
Q |
| |
|
||||| ||||||||| |||||||||| || |||||||||||||| ||||| |
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|
| T |
928591 |
aatgatttcttctttgccacatggttttgaagaaataaaagtttcctccat |
928641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 808 - 973
Target Start/End: Original strand, 927849 - 928013
Alignment:
| Q |
808 |
ctaagactgttttaacttcgcttgcctgttactttcctttcttaacaaggcaaacctcaaatatcacnnnnnnnnnnnnnntgtaatacatcagaattga |
907 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
927849 |
ctaaaactgttttaacttcgcttgcctattactttcctttcttaacaaggcaaacctcaaatatcacaaaaaaagaaaaa-tgtaatacatcagaattga |
927947 |
T |
|
| Q |
908 |
ttctaaagatagatttcaatattaaaagaaaattatgattgaaaaatgaaacttattaaagttgga |
973 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
927948 |
ttctaaagatagatttcaatattaaaagaaaattatgattgaaaaatgaaacgtattaaagttgga |
928013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 42 - 292
Target Start/End: Original strand, 939316 - 939569
Alignment:
| Q |
42 |
ccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggtt |
141 |
Q |
| |
|
||||||||| ||| |||| |||||||||||||||| | |||| ||||| || ||||||| |||||| |||||||||| |||||||||||||| |||| |
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|
| T |
939316 |
ccaatagcacgattgttaaggcatattgctttgcaccatagaaacttgtttggtatattttcaatgaagctgatgccttgttctttgctggtgtatggtt |
939415 |
T |
|
| Q |
142 |
ccccc---cagaacttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaagatgaaaggatcggagtgtgatttggttcaaatc |
238 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
939416 |
cccaagagcagaacttggccactttttcatcagttctccataccatgagatcatcaaggtcagaaagatgaaaaggtcggagtgtgatttggttcaaatc |
939515 |
T |
|
| Q |
239 |
gatgatctcttctttggcacatggtttggaggaaataaaagtttcttccataac |
292 |
Q |
| |
|
||| | | ||| ||| ||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
939516 |
aatgctttgttcattgccacttggtttggaagaaataaaagtttcctccataac |
939569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 62 - 281
Target Start/End: Original strand, 924056 - 924278
Alignment:
| Q |
62 |
gcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccccc---cagaacttggcc |
158 |
Q |
| |
|
||||||||||||||| | |||| ||||| || ||||||| |||||||||||||| | || ||||||||||| |||||| |||||||||||| |
|
|
| T |
924056 |
gcatattgctttgcaccatagaaacttggtagcaatattttcaatgaagttgatgccatcatccttgctggtgtagagttcccaagagcagaacttggcc |
924155 |
T |
|
| Q |
159 |
actttttcatcagtatgccacaccattacatcatcaaggtcagaaagatgaaaggatcggagtgtgatttggttcaaatcgatgatctcttctttggcac |
258 |
Q |
| |
|
|||||||||||||| ||| | ||| | |||||||||||||||||||| || || |||||||||||||||| | | ||| || ||||||||||||||| |
|
|
| T |
924156 |
actttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaaggggtcggagtgtgatttgggttagatcaattctctcttctttggcac |
924255 |
T |
|
| Q |
259 |
atggtttggaggaaataaaagtt |
281 |
Q |
| |
|
||||||||| |||||| ||||| |
|
|
| T |
924256 |
ctggtttggaagaaatagaagtt |
924278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 427 - 509
Target Start/End: Original strand, 924473 - 924555
Alignment:
| Q |
427 |
agtaatggatttcaaggttgcttcatgtctctgcctaccttggttgacttgaatatgcattaaatgggatccaaacctatgaa |
509 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||| || |||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
924473 |
agtaagggatttcaaggctgctttatgtctctgcctgccatggttgacttgaatatgcattaaaatggatccaagcctatgaa |
924555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 967 - 1014
Target Start/End: Original strand, 928079 - 928126
Alignment:
| Q |
967 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctt |
1014 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928079 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctt |
928126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 967 - 1014
Target Start/End: Original strand, 938998 - 939045
Alignment:
| Q |
967 |
agttggagatcattagaaagaacactaaacatgatcatatctctgctt |
1014 |
Q |
| |
|
|||||||||||| ||||||||||||| || || ||||||||||||||| |
|
|
| T |
938998 |
agttggagatcagtagaaagaacactgaaaataatcatatctctgctt |
939045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 46648422 - 46648477
Alignment:
| Q |
151 |
acttggccactttttcatcagtatgccacaccattacatcatcaaggtcagaaaga |
206 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||||||||| ||||||||| |
|
|
| T |
46648422 |
acttggccactttttcatcactagtccacaccaaaacatcatcaagatcagaaaga |
46648477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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