View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_21 (Length: 534)
Name: NF11928_low_21
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 17800605 - 17801119
Alignment:
| Q |
1 |
acgatcataatcaccattgcgataatgtggaggagttaacaaacaatacaacagcgccaccaccgataccgacgacgccaccgcctcctccaccaccacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17800605 |
acgatcataatcaccattgcgataatgtggaggagttaacaaacaatacaacagcgccac---cgataccgacgacgccaccgcctcctccaccaccacc |
17800701 |
T |
|
| Q |
101 |
tccatcagtttttcacagtatattcagaaaaagtcacggcaagagtaagaaaatccattcagtgccagcgccgccgccacctccgccatctaggagatcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17800702 |
tccatcagtttttcacagtatattcagaaaaagtcacggcaagagtaagaaaatccattcagtgccagcgccgccgccacctccgccatctaggagatcg |
17800801 |
T |
|
| Q |
201 |
tctaaaccaaagaaacatatccctccgccaccaccaactcctccacctgcaccatcacgtcggagaaaccacacaaagccgccattgccgaacaaatcaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17800802 |
tctaaaccaaagaaacatatccctccgccaccaccaactcctccacctgcaccatcacgtcggagaaaccacacaaagccgccattgccaaacaaatcaa |
17800901 |
T |
|
| Q |
301 |
gcaacttcatcaacgaaacggttgaaaacttcaatgccggcagccagtcgccattgatccccattccgcctcctttaccaccattcaaaatgccggcgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17800902 |
gcaacttcatcaacgaaacggttgaaaacttcaatgccggcagccagtcgccattgatccccattccgcctcctttaccaccattcaaaatgccggcgat |
17801001 |
T |
|
| Q |
401 |
gaagtttgcagttcgtggcgattttgttaagattcgaagtaaccagagctcgagaagtacatcaccggagcgtgagcacattgatgtggaagttacggaa |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17801002 |
gaagtttgcagttcgtggcgattttgttaagattcgaagtaaccagagctcgagaagtacatcaccggagcgtgagcacattgatgtggaagtaacggaa |
17801101 |
T |
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| Q |
501 |
accattgccgttgtgaat |
518 |
Q |
| |
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|||||||| ||||||||| |
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| T |
17801102 |
accattgctgttgtgaat |
17801119 |
T |
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