View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_23 (Length: 527)
Name: NF11928_low_23
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 66 - 512
Target Start/End: Complemental strand, 17595752 - 17595306
Alignment:
| Q |
66 |
gtaacaataatgtgtatatacaagtaaatgaataatacctttctatcccatccaatgtttagtataatcaatgacaagacacctttagtattcatgagca |
165 |
Q |
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| T |
17595752 |
gtaacaataatgtatatatacaaagaaatgaataatacctttctatcccatccaatgtttagtacaatcaatgataagacaccttttgtattcatgagca |
17595653 |
T |
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| Q |
166 |
ctccaagagccatactatctctaagagacattccatatatacttgtagcaactacagtgctcacaatcttggaagaaatcaacaagatcatgataacaca |
265 |
Q |
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| T |
17595652 |
ctccaagagccatactatctctaagagacattccatatatacttgtagcaactacagtgctcacaatcttggaagaaatcaacaagatcatgataacaca |
17595553 |
T |
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| Q |
266 |
aaccaacaacatattttgactaagagacaaataaagaaaataggtattacttctcaaacctatacttgcaaaaaacaatggtgccaaataacctgatgca |
365 |
Q |
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| T |
17595552 |
aaccaacaacatattttgactaagagacaaataaagaaaataggtattacttctcaaacctatacttgcaaaaaacaatggtgccaaataacctgatgca |
17595453 |
T |
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| Q |
366 |
atatcttctgtttgttcaatcaacatgtctgtaaactttccacgtggaagaattaacccaaaaatcaatgctccaacaactgaatgtgtaccaagaaatt |
465 |
Q |
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| T |
17595452 |
atatcttctgtttgttcaatcaacatgtctgtaaactttccacgtggaagaattaacccaaaaatcaatgctccaacaacagaatgtgtaccaagaaatt |
17595353 |
T |
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| Q |
466 |
cagtaacagttgcacatgcaataacaccaactaatacataggttaat |
512 |
Q |
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| T |
17595352 |
cagtaacagttgcacatgcaataacaccaactaatacataggttaat |
17595306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 17595778 - 17595740
Alignment:
| Q |
11 |
caaagggtaacaaaaggttttatcaagtaacaataatgt |
49 |
Q |
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| T |
17595778 |
caaagggtaacaaaaggttttatcaagtaacaataatgt |
17595740 |
T |
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