View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_24 (Length: 511)

Name: NF11928_low_24
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_24
NF11928_low_24
[»] chr1 (4 HSPs)
chr1 (1-494)||(24606673-24607181)
chr1 (354-405)||(6128011-6128062)
chr1 (352-405)||(9570644-9570696)
chr1 (354-398)||(4824978-4825022)
[»] chr3 (3 HSPs)
chr3 (368-405)||(14270564-14270601)
chr3 (315-405)||(8027715-8027805)
chr3 (355-395)||(40372152-40372192)
[»] chr5 (1 HSPs)
chr5 (364-406)||(31669059-31669101)
[»] scaffold0016 (1 HSPs)
scaffold0016 (354-407)||(77618-77671)
[»] chr8 (2 HSPs)
chr8 (369-398)||(31632430-31632459)
chr8 (354-398)||(9938001-9938045)
[»] chr4 (3 HSPs)
chr4 (364-405)||(6606058-6606099)
chr4 (361-405)||(10538806-10538850)
chr4 (354-406)||(44865333-44865385)
[»] scaffold0197 (1 HSPs)
scaffold0197 (365-409)||(11550-11594)
[»] chr2 (1 HSPs)
chr2 (354-406)||(41908663-41908715)


Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 24607181 - 24606673
Alignment:
Q  1 atcagtccttacaaatgcaagctaattccattgaaaagcatggttttattgtgggtttggttgagtttgacaatatcctacattaaatacttaatctagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||| |||| ||||||||||||||||    
T  24607181 atcagtccttacaaatgcaagctaattccattgaaaagcatggttttattgtgactttggttgagcttaacaatatccaacatcaaatacttaatctagc 24607082  T
Q  101 acgtgaaccagatgaggttcctcgtttgagttatttagg---tgtttctcgtattgagtctatggaaataatggcattgtttcctttttctaccacaatt 197  Q
    |||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24607081 acgtgaaccatatgaggttcctcgtttgagttatttagggggtgtttctcgtattgagtctatggaaataatggcattgtttcatttttctaccacaatt 24606982  T
Q  198 gttg--atgtt--------------tcaagctatgacaatgagccttgcattttatatggaaaagatcaagcatgcacgcacaagcaccatgcatgggat 281  Q
    ||||  |||||              || |||||||||||||||||||||||||| |||||||||| ||||||||||||    ||||||||||||||||||    
T  24606981 gttgttatgttctaaaaggtatgcctctagctatgacaatgagccttgcattttttatggaaaaggtcaagcatgcac----aagcaccatgcatgggat 24606886  T
Q  282 aactcttttttcttgaaaaagtcaacctaacccaccgaaaatggcatctggaagaatcgaatacgtttaaaagagcacgcttcaaggtctcaaaccaaca 381  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||||||||||||||| ||||    
T  24606885 aactctttt--cttgaaaaagtcaacctaacccaccgaaaatggcatcaggaagaatcggatacgtttaaaagggcatgcttcaaggtctcaaactaaca 24606788  T
Q  382 ccatcagaccaacccaattgggttattccgatccataaatgatgcgaattatgcgtttcttatctgaattggtgagaaattgctgtcaaatccttac--a 479  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||  |    
T  24606787 ccatcaaaccaacccaattgggttattccgatccataaatgatacgaattatccgtttcttatctgaattggtgagaaattgctgtcaaatccttacata 24606688  T
Q  480 tattactgtatattt 494  Q
    |||||||||||||||    
T  24606687 tattactgtatattt 24606673  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 6128011 - 6128062
Alignment:
Q  354 gagcacgcttcaaggtctcaaaccaacaccatcagaccaacccaattgggtt 405  Q
    ||||||||| ||||||| ||||||||||||| ||||||||| || |||||||    
T  6128011 gagcacgctccaaggtcccaaaccaacaccaccagaccaacacatttgggtt 6128062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 9570696 - 9570644
Alignment:
Q  352 aagagcacgcttcaaggtctcaaaccaacaccatcagaccaacccaattgggtt 405  Q
    |||||||| || ||||||||||| ||||||||||||| ||||||||| ||||||    
T  9570696 aagagcacactccaaggtctcaagccaacaccatcag-ccaacccaagtgggtt 9570644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 4825022 - 4824978
Alignment:
Q  354 gagcacgcttcaaggtctcaaaccaacaccatcagaccaacccaa 398  Q
    |||||| || ||||||| ||| |||||||||||||||||||||||    
T  4825022 gagcacactccaaggtcccaagccaacaccatcagaccaacccaa 4824978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 405
Target Start/End: Original strand, 14270564 - 14270601
Alignment:
Q  368 gtctcaaaccaacaccatcagaccaacccaattgggtt 405  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  14270564 gtctcaaaccaacaccatcaggccaacccaattgggtt 14270601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 405
Target Start/End: Original strand, 8027715 - 8027805
Alignment:
Q  315 accgaaaatggcatctggaagaatcgaatacgtttaaaagagcacgcttcaaggtctcaaaccaacaccatcagaccaacccaattgggtt 405  Q
    ||||||| || ||| | ||||||||||||| |   ||| ||||||  |||||||||  ||||||||||||||| |||||||||| ||||||    
T  8027715 accgaaattgacatttagaagaatcgaatatgagaaaaggagcacatttcaaggtcctaaaccaacaccatcaaaccaacccaagtgggtt 8027805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 40372192 - 40372152
Alignment:
Q  355 agcacgcttcaaggtctcaaaccaacaccatcagaccaacc 395  Q
    ||||| |||||||||| |||||||| |||||||||||||||    
T  40372192 agcacccttcaaggtcccaaaccaataccatcagaccaacc 40372152  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 31669059 - 31669101
Alignment:
Q  364 caaggtctcaaaccaacaccatcagaccaacccaattgggtta 406  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||    
T  31669059 caaggtcccaagccaacaccatcagaccaacccaagtgggtta 31669101  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 77671 - 77618
Alignment:
Q  354 gagcacgcttcaaggtctcaaaccaacaccatcagaccaacccaattgggttat 407  Q
    |||||| || ||| ||| |||||||||||||||||||||| |||| ||||||||    
T  77671 gagcacactccaaagtcccaaaccaacaccatcagaccaatccaagtgggttat 77618  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 398
Target Start/End: Original strand, 31632430 - 31632459
Alignment:
Q  369 tctcaaaccaacaccatcagaccaacccaa 398  Q
    ||||||||||||||||||||||||||||||    
T  31632430 tctcaaaccaacaccatcagaccaacccaa 31632459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 9938001 - 9938045
Alignment:
Q  354 gagcacgcttcaaggtctcaaaccaacaccatcagaccaacccaa 398  Q
    |||||| |||||||||| |||||||| ||||| ||||||||||||    
T  9938001 gagcacacttcaaggtcccaaaccaataccattagaccaacccaa 9938045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 405
Target Start/End: Complemental strand, 6606099 - 6606058
Alignment:
Q  364 caaggtctcaaaccaacaccatcagaccaacccaattgggtt 405  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||    
T  6606099 caaggtcccaagccaacaccatcagaccaacccaagtgggtt 6606058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 10538850 - 10538806
Alignment:
Q  361 cttcaaggtctcaaaccaacaccatcagaccaacccaattgggtt 405  Q
    |||||||||||||| ||||||||| ||||||||| ||| ||||||    
T  10538850 cttcaaggtctcaagccaacaccaccagaccaactcaagtgggtt 10538806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 44865385 - 44865333
Alignment:
Q  354 gagcacgcttcaaggtctcaaaccaacaccatcagaccaacccaattgggtta 406  Q
    |||||| | |||||| ||||| ||||||||||||| ||||||||| |||||||    
T  44865385 gagcacacatcaaggactcaagccaacaccatcaggccaacccaagtgggtta 44865333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 11550 - 11594
Alignment:
Q  365 aaggtctcaaaccaacaccatcagaccaacccaattgggttattc 409  Q
    ||||||||||  |||| | ||||||||||||||||||||||||||    
T  11550 aaggtctcaagtcaacgctatcagaccaacccaattgggttattc 11594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 41908663 - 41908715
Alignment:
Q  354 gagcacgcttcaaggtctcaaaccaacaccatcagaccaacccaattgggtta 406  Q
    |||||| || |||||||||||||| |||||| ||| ||||||||| |||||||    
T  41908663 gagcacactccaaggtctcaaaccgacaccaccaggccaacccaagtgggtta 41908715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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