View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_25 (Length: 500)
Name: NF11928_low_25
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Complemental strand, 28168889 - 28168412
Alignment:
| Q |
11 |
caaaggtgcatgaaacgttgatgaaattggaaagatatacaagagaattgaactcgtatattttgggaaacattaggaatcatcaaacgatattgaaaga |
110 |
Q |
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| T |
28168889 |
caaaggtgcatgaaacgttgatgaaattgaaaagatatacaagagaattgaactcgtatattttgggaaacattaggaatcatcaaacgatattgaaaga |
28168790 |
T |
|
| Q |
111 |
attaataaagaaagagaataaaacaactcttcataagtgtatggcttctactgagatgaggatatacacgagaagataagagtggttgtcgacaagatag |
210 |
Q |
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| T |
28168789 |
gttaataaagaaagagaataaaacaactcttcataaatgtatggcttctactgagatgaggatatacacgagaagataagagtggttgtcgacaagatag |
28168690 |
T |
|
| Q |
211 |
gagacatgatggatgaatttaagaagtttgaagaagctaggaaacgaaagttgaatacaccatgtaaagacatcctt---------------gttaaaaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| ||| |
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| T |
28168689 |
gagacatgatggatgaatttaagaagtttgaagaagctaggaaaagaaagttgaatacaccatgtaaggacatccttgttagaaattcgaatgttagaaa |
28168590 |
T |
|
| Q |
296 |
tgtaataacttgtatatggaaggtcgtcttatgcagcttaaatcctccatgtcgtccattctgaattactttctttccttgtgcaaaataatgttgattg |
395 |
Q |
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| T |
28168589 |
tgtaataacttgtatatggaaggtcgtcttatgtagcttaaatcctccatgtcgtccattccgaattactttctttccttgtgcaaaataatgttgattg |
28168490 |
T |
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| Q |
396 |
gtggtcatgaagacttgaaatcaatgatgcttactaagttaaaaggatataccaggccagcttatgttccagattgggatagt |
478 |
Q |
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| T |
28168489 |
gtggtcatgaagacttgaaatcaacgatgcttactaagttaaaaggatata-----ccagcttatgttccagatcgggatagt |
28168412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 293 - 447
Target Start/End: Complemental strand, 28173305 - 28173151
Alignment:
| Q |
293 |
aaatgtaataacttgtatatggaaggtcgtcttatgcagcttaaatcctccatgtcgtccattctgaattactttctttccttgtgcaaaataatgttga |
392 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||| |||||||||||||| || || ||||||||||| |
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| T |
28173305 |
aaatgtaataacttgtatatggaaggtcgccttatgtagcttaaatcatccatgttgtccattccaaattactttctttctttttgtaaaataatgttcg |
28173206 |
T |
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| Q |
393 |
ttggtggtcatgaagacttgaaatcaatgatgcttactaagttaaaaggatatac |
447 |
Q |
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| T |
28173205 |
ttggtggtcgtgaagacttgaaatcaacgatgcttgctcagttaaaaagatatac |
28173151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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