View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_26 (Length: 486)
Name: NF11928_low_26
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 474
Target Start/End: Original strand, 41304605 - 41305062
Alignment:
| Q |
16 |
caactacaattatagggagagtcaatggcactaagaagcagtagtacctatgaaataaataaaagttaggaagaaaaggatggttccctccttttatggg |
115 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41304605 |
caactacaaatatagggagagtcaatggcactaagaagcagtagtacctatgaaataaataaaagttaggaagaaaaggatggttccctccttttatggg |
41304704 |
T |
|
| Q |
116 |
agaggt----acgagtaatagcaactaacatttacaaaagaaataacaatagcaatattgcaatactaaacctaaagtatagtttcttttccgcagagtc |
211 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41304705 |
agaggtaggtacgagtaatagcaactaacatttacaaaagaaataacaatagcaatattgcaatactaaacctaaagtatagtttcttttccgcagagtc |
41304804 |
T |
|
| Q |
212 |
caaactccaacagggagacaacgcgaaaataacagaatgctcaaatagtgtgtatcgcatgacaatggcaattaattcaaattctactacgcaacaatat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41304805 |
caaactccaacagggagacaacgcgaaaataacagaatgctcaaata--gtgtatcgcatgacaatggcaattaattcaaattctactacgcaacaatat |
41304902 |
T |
|
| Q |
312 |
agccgctatttgacaaaactttttactaaataacaatttgttcaaattctgatatactactataatactgctatagccaccatttgacaacattgtttgt |
411 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41304903 |
agccgctatttgacaaaactttgtactaaataacaatttgttcaaattctgata---tactataatactgctatagccgccatttgacaacattgtttgt |
41304999 |
T |
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| Q |
412 |
acaataatgattttaaaattttctgattaatacaacattaacataacaatcaaagtatattct |
474 |
Q |
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| T |
41305000 |
acaataatgattttaaaattttctgattaatacaacattaacataacaatcaaagtatattct |
41305062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 1075766 - 1075647
Alignment:
| Q |
16 |
caactacaattatagggagagtcaatggcactaagaagcagtagtacctatgaaataaataaaagttaggaagaaaaggatggttccctccttttatggg |
115 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| || | ||| | | ||||| |||||| |||||||| ||| |
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| T |
1075766 |
caaccacaattataggcagagtcaatggcactaagaagcaatagtacctatgaaatgaatacaattcaggtaaataaggagggttccttccttttacggg |
1075667 |
T |
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| Q |
116 |
agaggtacgagtaatagcaa |
135 |
Q |
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| T |
1075666 |
agaggtacgagtaatagcaa |
1075647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 13015873 - 13015912
Alignment:
| Q |
16 |
caactacaattatagggagagtcaatggcactaagaagca |
55 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||| |
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| T |
13015873 |
caaccacacttatagggagagtcaatggcactaagaagca |
13015912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 342
Target Start/End: Original strand, 14343444 - 14343476
Alignment:
| Q |
310 |
atagccgctatttgacaaaactttttactaaat |
342 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
14343444 |
atagccgctatttgacaacactttttactaaat |
14343476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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