View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_27 (Length: 484)
Name: NF11928_low_27
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Complemental strand, 12910712 - 12910256
Alignment:
| Q |
19 |
gtatcaggttatatatctgatttgctgagtgagtttgttaatgattattatgatatctttgtaatttctatgtatgtatgtatg----aatagtttgttt |
114 |
Q |
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| T |
12910712 |
gtatcaggttatatatctgattcgctgagtgagtttgttaatgattattatgatatctttgtaatttctatgtatgtatgtatgtatgaatagtttgttt |
12910613 |
T |
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| Q |
115 |
ctctc-gaataaaaatccgaatcttttagtattcaagctttgaagtgtattttatgttttgataaattggattttcattttaatcccttaagttgaattg |
213 |
Q |
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| T |
12910612 |
ctctcagaataaaaatccgaatcttttagtattcaagctttgaagtgtattttatgttttgataaattggattttcattttaatcccttaagttgaattg |
12910513 |
T |
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| Q |
214 |
aatcttttagtgtatctgagaagggccttatattttttacattttacgtgtctctgttaacttgataatcaagtgatacatgatgctttttatagtacat |
313 |
Q |
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| T |
12910512 |
aatcttttagtgtatctgagaagggccttatattttttacattttacgtgtctctgttaacttgataatcaagtgatacatgatgctttttatagtacat |
12910413 |
T |
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| Q |
314 |
aatttgctaaagtgctttttctctttcattcttttctcatactagtacctgaatttatgtgattccgcgactagtaaattgctcaatcataactcaaggc |
413 |
Q |
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| T |
12910412 |
aatttgctaaagtgctttttctctttcattcttttctcatactagtacctgaatttatgtgattccgcgactagtaaattgctcaatcataactcaaggc |
12910313 |
T |
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| Q |
414 |
cagcgtcaataatgcttagttgtcaattaacgccaacttgtactttgtgtgtttcat |
470 |
Q |
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| T |
12910312 |
cagcctcaataatgcttagttatcgattaacgccaacttgtactttgtgtgtttcat |
12910256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 475
Target Start/End: Original strand, 13308259 - 13308339
Alignment:
| Q |
395 |
ctcaatcataactcaaggccagcgtcaataatgcttagttgtcaattaacgccaacttgtactttgtgtgtttcatctcat |
475 |
Q |
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||||||||| |||||||||||| ||||||||| |||||||||||||| | |||| |||||||||||||||||||| |||| |
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| T |
13308259 |
ctcaatcatggctcaaggccagcttcaataatgtttagttgtcaattagcaccaatttgtactttgtgtgtttcatttcat |
13308339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 373
Target Start/End: Original strand, 13308217 - 13308248
Alignment:
| Q |
342 |
ttcttttctcatactagtacctgaatttatgt |
373 |
Q |
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| T |
13308217 |
ttcttttctcatactagtacctgaatttatgt |
13308248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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