View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_28 (Length: 472)
Name: NF11928_low_28
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 12815425 - 12814984
Alignment:
| Q |
18 |
gaatatactttttcggatagtcttttctcatttaactctgatttaatttgttcaataaccgttgagatggatttgtcaggtaagagtttccagatctcac |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12815425 |
gaatatactttttcggatagtcttttctcatgtaactctgatttaatttgttcaataaccgttgagatggatttgtcaggtaagagtttccagatctcac |
12815326 |
T |
|
| Q |
118 |
gcgatcatttgaagaaagagaagcaaggaagtagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaataaagctgccagggcatatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12815325 |
gcgatcatttgaagaaagagaagcaaggaagtagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaataaagctgccagggcatatgt |
12815226 |
T |
|
| Q |
218 |
taggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12815225 |
taggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaa |
12815126 |
T |
|
| Q |
318 |
gacagcagcagtgctcgcaagaaatcaggccatgcttctgtcggaagctaccctgtggcagccggagtttcacagtgaatagtctttgactttagacatt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12815125 |
gacagcagcagtgctcgcaagaaatcaggccatgcttctgtcggaagctaccctgtggcagccggagtttcacagtgaatagtctttgactttaggcatt |
12815026 |
T |
|
| Q |
418 |
tggctgtgtacttggttttttggggtgaaaatacctttatct |
459 |
Q |
| |
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| T |
12815025 |
tggctgtgtacttggttttttggggtgaaaatacctttatct |
12814984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 12752465 - 12752022
Alignment:
| Q |
18 |
gaatatactttttcggatagtcttttctcatttaactctgatttaatttgttcaataaccgttgagatggatttgtcaggtaagagtttccagatctcac |
117 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12752465 |
gaatatactttttcggatagtcttttctcatgtaactctgatttaatttgttcaataaccgttgagatggatttgtcaggtaagagtttccagatctcac |
12752366 |
T |
|
| Q |
118 |
gcgatcatttgaagaaagagaagcaaggaagtagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaataaagctgccagggcatatgt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12752365 |
gcgatcatttgaagaaagagaagcaaggaattagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaataaagctgccagggcatatgt |
12752266 |
T |
|
| Q |
218 |
taggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12752265 |
taggaatatgcctggttcaaggagaggtgcatttttggacttacttggcgattctccagaaaacaagagaaaaaagactggttcatcgcattctgacaaa |
12752166 |
T |
|
| Q |
318 |
gacagcagcagtgctcgcaagaaatcaggccatgcttctgtcggaagctaccctgtggcagccggagtttcacagtga--atagtctttgactttagaca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
12752165 |
gacagcagcagtgctcgcaagaaatcaggccatgcttctgtcggaagctaccctgtggcagccggagtttcacagtgaatatagtctttgactttaggca |
12752066 |
T |
|
| Q |
416 |
tttggctgtgtacttggttttttggggtgaaaatacctttatct |
459 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12752065 |
tttggctgtgtacttggttttttggggtgaaaatacctttatct |
12752022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 7768223 - 7768370
Alignment:
| Q |
104 |
tttccagatctcacgcgatcatttgaagaaagagaagcaaggaagtagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaataaagct |
203 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||||||| | ||||| ||||||||||||||| |||||| || |||||| ||||||||||| |
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| T |
7768223 |
tttccagatttcacgcgatcatttgaagacagagaagcaaaggagtagcagtaaaagatcatcat---acaagtcaaatgacaatcctgaaaataaagct |
7768319 |
T |
|
| Q |
204 |
gccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttg |
254 |
Q |
| |
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|||| | ||||| | |||||||| |||||||||||||| |||||||||| |
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| T |
7768320 |
gccatttcttatgtgaagaatatgcatggttcaaggagagatgcatttttg |
7768370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 98 - 344
Target Start/End: Original strand, 7774415 - 7774658
Alignment:
| Q |
98 |
taagagtttccagatctcacgcgatcatttgaagaaagagaagcaaggaagtagtggtaaaagatcatcatcaggcaagtcttcggataatcctcaaaat |
197 |
Q |
| |
|
|||||| |||||||| |||||||||||| ||||| |||||||||| | ||||| |||||||||| || | ||||| || |||||||||||| |
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| T |
7774415 |
taagaggttccagatttcacgcgatcatacgaagacagagaagcaacggagtagcagtaaaagatcttcctattataagtcaaatgacaatcctcaaaat |
7774514 |
T |
|
| Q |
198 |
aaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccagaaaacaagagaaaaaagactg |
297 |
Q |
| |
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||||||| || |||||| ||| ||||||| ||||||||| |||||| ||||||||||||| | |||| || |||||||||||||| ||||| | |
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| T |
7774515 |
aaagctgacattgcatatcttaagaatatgaatggttcaagaagaggtcgatttttggacttaatcggtgcatccccagaaaacaagag---aaagatgg |
7774611 |
T |
|
| Q |
298 |
gttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatca |
344 |
Q |
| |
|
||| ||||| |||||||||| |||| |||||||| |||||||||| |
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|
| T |
7774612 |
attcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatca |
7774658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 193 - 344
Target Start/End: Original strand, 7779318 - 7779469
Alignment:
| Q |
193 |
aaaataaagctgccagggcatatgttaggaatatgcctggttcaaggagaggtgcatttttggacttacttggtgattctccag-aaaacaagagaaaaa |
291 |
Q |
| |
|
||||||||||||||| || | | ||| |||||||| | |||||||||||| |||||||||| || || |||||||||| |||| |||| |||||||||| |
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| T |
7779318 |
aaaataaagctgccattgcgtgtattaagaatatgcatagttcaaggagagatgcatttttgaacataattggtgattc-ccagaaaaataagagaaaaa |
7779416 |
T |
|
| Q |
292 |
agactggttcatcgcattctgacaaagacagcagcagtgctcgcaagaaatca |
344 |
Q |
| |
|
||| | ||||||||| |||||||||| | ||| |||||||| |||||||||| |
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|
| T |
7779417 |
agatcgattcatcgcagtctgacaaaggccgcaacagtgctcccaagaaatca |
7779469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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