View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_29 (Length: 467)
Name: NF11928_low_29
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 105 - 457
Target Start/End: Complemental strand, 2402333 - 2401974
Alignment:
| Q |
105 |
ctattttaaaacatttcatccttttcttttttaggtgaacataaattattgattgattttcaannnnnnnngctgacatttttccacttatacaacagga |
204 |
Q |
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| T |
2402333 |
ctattttaaaacatttcatccttttcttttttatgagaacataaattattgattgattttcaactttttt-gctgacattttttcacttatacgacagga |
2402235 |
T |
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| Q |
205 |
taatgatgcaagggagaaactccgagctcttcttggtttatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataattattctt- |
303 |
Q |
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| T |
2402234 |
taatgttgcaagagagaaactccgagctgttcttgatctatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataattattcttg |
2402135 |
T |
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| Q |
304 |
atttgtatttcttttccatccacttcagtaaattcattactcactgttttatcta-------ccgtaatatgatttaatacattgccatgcactgttcag |
396 |
Q |
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| T |
2402134 |
aattttatttctttcctattcacttcagtaagttcattactcgctgttttatctaccgtagtccgtaatatgatttaatatgttgccatgcactgttcag |
2402035 |
T |
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| Q |
397 |
gctcttctttcaggtagcattatctatgacgttccctgttaccattcgttagtactccaac |
457 |
Q |
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| T |
2402034 |
gctcttctttcaggtatcaatatctacgacgttcccagttaccattcgttagtactgcaac |
2401974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 2402462 - 2402367
Alignment:
| Q |
7 |
gttccttcgattcttaattcattgaaggttgtacatttggagacagatatagaaattgttgatgtctttgacagagctgttggaattgcaaattct |
102 |
Q |
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| T |
2402462 |
gttccttcgattcttaattcattgaaggttgtacatttggagacagataaagcaattgatgatgtctttgacagaactgttgagatttcaaattct |
2402367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 2798497 - 2798583
Alignment:
| Q |
211 |
tgcaagggagaaactccgagctcttcttggtttatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataatt |
297 |
Q |
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| T |
2798497 |
tgcaagggagaagttccgatctctgcttggtctatatgtcctgcagtgcttggtaattgctctgtactgcatttaaattttataatt |
2798583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 409
Target Start/End: Original strand, 2798615 - 2798662
Alignment:
| Q |
362 |
taatatgatttaatacattgccatgcactgttcaggctcttctttcag |
409 |
Q |
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| T |
2798615 |
taatgtgatttaatatgttgccatgcactgttcaggctcttgtttcag |
2798662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 300
Target Start/End: Original strand, 4247734 - 4247931
Alignment:
| Q |
100 |
tctgtctattttaaaacatttcatccttttcttttttaggtgaacataaattattgattgattttcaannnnnnnngctgacatttttccacttatacaa |
199 |
Q |
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| T |
4247734 |
tctgtctattataaaacatttcatcttttcatttgttgggagaacataaattattgttatattttcaatttttt--gccgacattttttcactta-acag |
4247830 |
T |
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| Q |
200 |
caggataatgatgcaagggagaaactccgagctcttcttggtttatatgtcctgcaatgcttggtagttgctcttcactacattaaaattttataattat |
299 |
Q |
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| T |
4247831 |
gatgaggatgctgcaagggagaagttccgatctctgcttggtctatatgtcctgcagtgcttggtaattgctctgtactgcatttaaattttataattat |
4247930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 409
Target Start/End: Original strand, 4247960 - 4248007
Alignment:
| Q |
362 |
taatatgatttaatacattgccatgcactgttcaggctcttctttcag |
409 |
Q |
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| T |
4247960 |
taatgtgatttaatatgttgccatgcactgttcaggctcttgtttcag |
4248007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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