View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_3 (Length: 947)

Name: NF11928_low_3
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_3
NF11928_low_3
[»] chr3 (24 HSPs)
chr3 (457-929)||(9349043-9349515)
chr3 (1-388)||(9348610-9348997)
chr3 (1-366)||(9370264-9370629)
chr3 (426-664)||(9370674-9370902)
chr3 (746-929)||(9370962-9371146)
chr3 (228-305)||(9341567-9341644)
chr3 (227-355)||(9493998-9494126)
chr3 (228-317)||(9613103-9613192)
chr3 (1-70)||(9341327-9341396)
chr3 (232-297)||(9403059-9403124)
chr3 (228-290)||(9353757-9353819)
chr3 (232-297)||(9421298-9421363)
chr3 (10-54)||(9407962-9408006)
chr3 (227-350)||(9616652-9616778)
chr3 (11-54)||(9426170-9426213)
chr3 (11-54)||(9441257-9441300)
chr3 (253-350)||(9625705-9625802)
chr3 (232-356)||(9344679-9344803)
chr3 (246-302)||(9449146-9449202)
chr3 (227-302)||(9654636-9654714)
chr3 (11-54)||(9417167-9417210)
chr3 (228-290)||(9377942-9378004)
chr3 (21-70)||(9353538-9353587)
chr3 (227-296)||(9433703-9433772)
[»] chr2 (1 HSPs)
chr2 (227-302)||(20693526-20693601)
[»] chr1 (5 HSPs)
chr1 (199-302)||(8813611-8813714)
chr1 (229-305)||(235947-236023)
chr1 (200-302)||(229885-229987)
chr1 (232-302)||(250616-250686)
chr1 (247-292)||(4440665-4440710)
[»] chr6 (4 HSPs)
chr6 (232-292)||(28133077-28133137)
chr6 (232-302)||(28177179-28177249)
chr6 (232-292)||(28177102-28177162)
chr6 (232-302)||(28219946-28220016)
[»] scaffold0038 (1 HSPs)
scaffold0038 (232-302)||(20444-20514)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 457 - 929
Target Start/End: Original strand, 9349043 - 9349515
Alignment:
Q  457 aagaagaagtaaaggaaccaaaccctaagtgacnnnnnnnnctgcactgttgaagaatagggttaacttctttgtgatatcagaaattcatatttatatt 556  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9349043 aagaagaagtaaaggaaccaaaccctaagtgacaaaaaaaactgcactgttgaagaatagggttaacttctctgtgatatcagaaattcatatttatatt 9349142  T
Q  557 ggaagatctttcaggatatagggtttggaatttggatatatatgagtaaaaaatataggtagctttattatattagactttgctcgggttagacatctaa 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9349143 ggaagatctttcaggatatagggtttggaatttggatatatatgagtaaaaaatataggtagctttattatattagactttgctcgggttagacatctaa 9349242  T
Q  657 tcaaggatatannnnnnncgaagaataattaatgatggctaattcttcaagaaaaaaataannnnnnnnnnagggaagnnnnnnntaaaattaatgatgg 756  Q
    |||||||||||       ||||||||||||||||||||||||| |||||||||||||||||          |||||||       |||||||||||||||    
T  9349243 tcaaggatatatttttttcgaagaataattaatgatggctaatccttcaagaaaaaaataattttttttttagggaagaaaaaaataaaattaatgatgg 9349342  T
Q  757 ctaaaattgtgtatgcatgatatcctgaaataaagttcaccacggaccgacgcggaacggatatcataacgggtacacacaaatagaattaaatatataa 856  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9349343 ctaaaattgtgtatacatgatatccggaaataaagttcaccacggaccgacgcggaacggatatcataacgggtacacacaaatagaattaaatatataa 9349442  T
Q  857 ttcatattttagtatctctaaactaatagatgcatcaacagatgaaattaatttgagttattaacattattaa 929  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9349443 ttcatattttagtatctctaaactaatagatgcatcaacagatgaaattaatttgagttattaacattattaa 9349515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 9348610 - 9348997
Alignment:
Q  1 aagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtggcttgacaaggacga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||    
T  9348610 aagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgatgaattggggtttttccatgttgtggtggcctgacaaggacga 9348709  T
Q  101 gagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtcttcggaatcatgtacgag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |  |||||||||||||||    
T  9348710 gagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgagagatggtagtttctggaatcatgtacgag 9348809  T
Q  201 tgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttg 300  Q
    |||||||  ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9348810 tgggaataggatgggtgaagtttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttg 9348909  T
Q  301 tcaatgaattgtgatatcaaactcacaagctccattgggagtgcagaccaatctgccgtagatgatgttgatgtgccccgctggttca 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9348910 tcaatgaattgtgatatcaaactcacaagctccattgggagtgcagaccaatctgccgtagatgatgttgatgtgccccgctggttca 9348997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 9370264 - 9370629
Alignment:
Q  1 aagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtggcttgacaaggacga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9370264 aagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtggcttgacaaggacga 9370363  T
Q  101 gagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtcttcggaatcatgtacgag 200  Q
    |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||    
T  9370364 gagtgcgtttggagaggtaacataatggtgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtttccggaatcatatacgag 9370463  T
Q  201 tgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttg 300  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9370464 tgggaatttgatgggtgaagtttgaagatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttg 9370563  T
Q  301 tcaatgaattgtgatatcaaactcacaagctccattgggagtgcagaccaatctgccgtagatgat 366  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9370564 tcgatgaattgtgatatcaaactcacaagctccatcgggagtgcagaccaatctgccgtagatgat 9370629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 426 - 664
Target Start/End: Original strand, 9370674 - 9370902
Alignment:
Q  426 aaaaggttaacgtcttccgtaaaatagcaaaaagaagaagtaaaggaaccaaaccctaagtgacnnnnnnnnctgcactgttgaagaatagggttaactt 525  Q
    |||||||| ||||||||||||||||||||||| ||||   ||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  9370674 aaaaggtttacgtcttccgtaaaatagcaaaaggaag---taaaggaaccaaaccctaagtgacaaaaaaaactgcactgttgaagaatagggttaactt 9370770  T
Q  526 ctttgtgatatcagaaattcatatttatattggaagatctttcaggatatagggtttggaatttggatatatatgagtaaaaaatataggtagctttatt 625  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||| |||||||||||||||||    
T  9370771 ctctgtgatatcagaaattcatatttatattggaagatctttcaggatataggg-------tttgtatatatatgagtaaaatatataggtagctttatt 9370863  T
Q  626 atattagactttgctcgggttagacatctaatcaaggat 664  Q
    ||||||||||||| |||| |||||||| |||| ||||||    
T  9370864 atattagactttgttcggcttagacatataattaaggat 9370902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 746 - 929
Target Start/End: Original strand, 9370962 - 9371146
Alignment:
Q  746 attaatgatggctaaaattgtgtatgcatgatatcctgaaataaagttcaccacggaccgacgcggaacggatatcataacgggtacacacaaatagaat 845  Q
    |||||||||||||||||||||||||  ||||||||   ||||||| ||| | | |||| ||| ||||| ||||||||||| |||||||||||||||||||    
T  9370962 attaatgatggctaaaattgtgtataaatgatatcagcaaataaaattccctaaggactgacacggaatggatatcataatgggtacacacaaatagaat 9371061  T
Q  846 taaatatataattcatatttt-agtatctctaaactaatagatgcatcaacagatgaaattaatttgagttattaacattattaa 929  Q
    |||||| |||||||||||||| ||||||  |||| ||||||||||| |||| ||||||||||||| |||||  ||| ||||||||    
T  9371062 taaataaataattcatattttaagtatccgtaaattaatagatgcaccaacggatgaaattaattggagtttgtaaaattattaa 9371146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 9341567 - 9341644
Alignment:
Q  228 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaat 305  Q
    |||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  9341567 atggtgatttgggatggaggaagaacgccaattggaacaaatggatcgaaatcgaatgagatcgatttcggtgtcaat 9341644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 227 - 355
Target Start/End: Complemental strand, 9494126 - 9493998
Alignment:
Q  227 gatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaactcac 326  Q
    ||||||| ||| ||||||| ||||||||||||||| |||| | ||||||||| |||||||||||||||||  |||| ||    |||||||||| | ||||    
T  9494126 gatggtgctttcgaatggaagaagagcgccaattgcaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcac 9494027  T
Q  327 aagctccattgggagtgcagaccaatctg 355  Q
    ||| ||||| |||||||||||||||||||    
T  9494026 aagatccatcgggagtgcagaccaatctg 9493998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 9613192 - 9613103
Alignment:
Q  228 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatat 317  Q
    |||||||||||| |||||||||||||||||  | |||||||||||||||||| |||| || |||| ||||||||||||| ||||||||||    
T  9613192 atggtgatttgggatggaggaagagcgccacgttgaacaaattgatcgaaaatgaataaggtcgagttcgttgtcaatgcattgtgatat 9613103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9341327 - 9341396
Alignment:
Q  1 aagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt 70  Q
    |||| ||| ||||| |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||    
T  9341327 aagagtttggttttgccatgtgagttttgagtaaatctaatcaaccaaggacgacgaggaattagggttt 9341396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 9403059 - 9403124
Alignment:
Q  232 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcg 297  Q
    |||||| | ||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||    
T  9403059 tgatttcggatggaagaagaacgccaattggaacaaactgatcgaaagcgaatgagatcgatttcg 9403124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 9353757 - 9353819
Alignment:
Q  228 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatc 290  Q
    ||||| ||||||||| | ||||||||||||| | ||||||| |||||||||||||||||||||    
T  9353757 atggtcatttggaatcggggaagagcgccaagttgaacaaactgatcgaaaacgaatgagatc 9353819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 9421298 - 9421363
Alignment:
Q  232 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcg 297  Q
    |||||| | ||||| || || |||||||||||||||| ||||||||| ||||||||||||||||||    
T  9421298 tgatttcggatggaagatgaacgccaattggaacaaactgatcgaaagcgaatgagatcgatttcg 9421363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 9407962 - 9408006
Alignment:
Q  10 gtttttccatgtgagttttgtgtaactctaatcaaccaaggacga 54  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  9407962 gttttgccatgtgagttttgggtaactctaatcaaccaaggacga 9408006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 350
Target Start/End: Complemental strand, 9616778 - 9616652
Alignment:
Q  227 gatggtgatttggaatggaggaagagcg---ccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaact 323  Q
    ||||||||||||  | ||||||||||||   |||||||||||| |  |||||||| |||||||||||||| | |||||||||   || |||||||| | |    
T  9616778 gatggtgatttgagacggaggaagagcgacgccaattggaacataccgatcgaaagcgaatgagatcgatcttgttgtcaattccttttgatatcagatt 9616679  T
Q  324 cacaagctccattgggagtgcagacca 350  Q
     | ||||||| ||||||| ||||||||    
T  9616678 tagaagctcccttgggagagcagacca 9616652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 9426170 - 9426213
Alignment:
Q  11 tttttccatgtgagttttgtgtaactctaatcaaccaaggacga 54  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  9426170 ttttgccatgtgagttttgggtaactctaatcaaccaaggacga 9426213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 9441300 - 9441257
Alignment:
Q  11 tttttccatgtgagttttgtgtaactctaatcaaccaaggacga 54  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  9441300 ttttgccatgtgagttttgggtaactctaatcaaccaaggacga 9441257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 9625802 - 9625705
Alignment:
Q  253 cgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagctccattgggagtgcagacca 350  Q
    ||||||||||||||||  |||||||| || ||||||||||||||| |||||||   ||| || |||| | ||| ||||||| |||||||  |||||||    
T  9625802 cgccaattggaacaaacagatcgaaagcgtatgagatcgatttcgatgtcaattctttgcgaaatcatattcaaaagctcctttgggagatcagacca 9625705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 356
Target Start/End: Original strand, 9344679 - 9344803
Alignment:
Q  232 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagct 331  Q
    ||||| || ||||| |||||| |||||||||||||||  |||||||| ||||||||||| | ||| ||||| | |  ||| ||||| | | | | ||| |    
T  9344679 tgattggggatggaagaagagtgccaattggaacaaacagatcgaaagcgaatgagatcaagttcattgtcgaggcgttgcgatataagattgagaagat 9344778  T
Q  332 ccattgggagtgcagaccaatctgc 356  Q
    || |||||||| |||||||||||||    
T  9344779 cctttgggagttcagaccaatctgc 9344803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 9449146 - 9449202
Alignment:
Q  246 ggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 302  Q
    ||||| || |||| ||||||||| ||||||||||||||||||||||| ||| |||||    
T  9449146 ggaagtgcaccaaatggaacaaactgatcgaaaacgaatgagatcgagttcattgtc 9449202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 9654714 - 9654636
Alignment:
Q  227 gatggtgatttggaatggaggaagagcg---ccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 302  Q
    ||||||||||||| | ||||||||||||   ||||||||||||||  |||||||| ||||| | |||||||||| ||||    
T  9654714 gatggtgatttgggacggaggaagagcgacgccaattggaacaaaccgatcgaaagcgaatcatatcgatttcgatgtc 9654636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 9417167 - 9417210
Alignment:
Q  11 tttttccatgtgagttttgtgtaactctaatcaaccaaggacga 54  Q
    |||| |||||||||||||| |||||||| |||||||||||||||    
T  9417167 ttttgccatgtgagttttgggtaactctgatcaaccaaggacga 9417210  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 9377942 - 9378004
Alignment:
Q  228 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatc 290  Q
    ||||| |||||||||||  |||||| ||||| | |||||||  ||||||||||||||||||||    
T  9377942 atggtcatttggaatgggagaagagtgccaagttgaacaaaccgatcgaaaacgaatgagatc 9378004  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 9353538 - 9353587
Alignment:
Q  21 tgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt 70  Q
    ||||||||| |||| ||  ||||||||||| |||||||||||||||||||    
T  9353538 tgagttttgggtaattcgtatcaaccaaggccgacgacgaattagggttt 9353587  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 9433703 - 9433772
Alignment:
Q  227 gatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttc 296  Q
    |||| |||||| | || |||||||| ||||||| |||||||| |||||| || ||||||||||| |||||    
T  9433703 gatgatgattttggatcgaggaagaacgccaatgggaacaaactgatcggaagcgaatgagatcaatttc 9433772  T

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Target: chr2 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 20693601 - 20693526
Alignment:
Q  227 gatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 302  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||| ||||    
T  20693601 gatggtgatttgggatggaggaagaacgccaattggaacaaactgatcgaaagcgaatgagatcgagttcgctgtc 20693526  T

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Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 199 - 302
Target Start/End: Complemental strand, 8813714 - 8813611
Alignment:
Q  199 agtgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgt 298  Q
    |||||||||||||| | | |||| | ||| ||||||||||| ||||| |||||  ||||||||| |||||||||||| || |||||||||||||||||||    
T  8813714 agtgggaatttgatggttaaaatgttacggtggtgatttgggatggaagaagaatgccaattggtacaaattgatcggaagcgaatgagatcgatttcgt 8813615  T
Q  299 tgtc 302  Q
    ||||    
T  8813614 tgtc 8813611  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 235947 - 236023
Alignment:
Q  229 tggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaat 305  Q
    |||||||| || ||||| ||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||||    
T  235947 tggtgattcgggatggaagaagaacgccaattggtacaaattgatcggaagcgaatgagatcgatttcgttgtcaat 236023  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 229885 - 229987
Alignment:
Q  200 gtgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgtt 299  Q
    ||||||||||||| | | | || | ||| ||||||||||| ||||| ||||| |||||||||||||| |||||||| || ||||||| ||||||||||||    
T  229885 gtgggaatttgatggttaacatgtcacggtggtgatttgggatggaagaagaacgccaattggaacagattgatcggaagcgaatgatatcgatttcgtt 229984  T
Q  300 gtc 302  Q
    |||    
T  229985 gtc 229987  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 250686 - 250616
Alignment:
Q  232 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 302  Q
    |||||||| ||||| | ||| |||||||||||||| |||||||| || | | |||||||||||| ||||||    
T  250686 tgatttgggatggaagcagaacgccaattggaacatattgatcggaagctattgagatcgattttgttgtc 250616  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 4440665 - 4440710
Alignment:
Q  247 gaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 292  Q
    |||||||||||  |||||||| ||||||| ||||||||||||||||    
T  4440665 gaagagcgccatgtggaacaagttgatcggaaacgaatgagatcga 4440710  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 28133077 - 28133137
Alignment:
Q  232 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 292  Q
    |||||||||||||| |||||| |||||||| |||||| ||||| |||||||||| ||||||    
T  28133077 tgatttggaatggaagaagagtgccaattgaaacaaactgatcaaaaacgaatgtgatcga 28133137  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 28177179 - 28177249
Alignment:
Q  232 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 302  Q
    |||||||||||||| |||||| | |||||||||| ||   ||||||||||||||||||||| ||| |||||    
T  28177179 tgatttggaatggaagaagagtgtcaattggaacgaacatatcgaaaacgaatgagatcgagttcattgtc 28177249  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 28177162 - 28177102
Alignment:
Q  232 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 292  Q
    ||||||||| | || |||||| |||||||||||||||  |||||||||| |||||||||||    
T  28177162 tgatttggagttgaagaagagtgccaattggaacaaacagatcgaaaacaaatgagatcga 28177102  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 28219946 - 28220016
Alignment:
Q  232 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 302  Q
    ||||||||||| || |||||| | |||||| ||| ||  |||||||||||||||||||||| ||| |||||    
T  28219946 tgatttggaatagaagaagagtgtcaattgaaacgaacagatcgaaaacgaatgagatcgagttcattgtc 28220016  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 20444 - 20514
Alignment:
Q  232 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 302  Q
    ||||||||||| || |||||| | |||||| ||| ||  |||||||||||||||||||||| ||| |||||    
T  20444 tgatttggaatagaagaagagtgtcaattgaaacgaacagatcgaaaacgaatgagatcgagttcattgtc 20514  T

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