View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_30 (Length: 454)
Name: NF11928_low_30
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 132 - 446
Target Start/End: Original strand, 11977885 - 11978200
Alignment:
| Q |
132 |
ttaacaagcaaagcaacacattttgttattaaaccacataacatagtactaatcaaaaggaagacatgacttcagttctatgatagaattggccagatgg |
231 |
Q |
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| T |
11977885 |
ttaacaagcaaagcaacacattttgttattaaaccacataacatagtactaatcaaaaggaagacatgacttcagtcctatgatagaattggccagatgg |
11977984 |
T |
|
| Q |
232 |
acttccattgggaagcaatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataacca |
331 |
Q |
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| T |
11977985 |
acttccattgggaagcaatgctagcttcacaacactagcagcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataacca |
11978084 |
T |
|
| Q |
332 |
gggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtat-agcattcatagcagctttagacaagacataagcaccaccagttt |
430 |
Q |
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| T |
11978085 |
gggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttagacaagacataagcaccaccagttt |
11978184 |
T |
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| Q |
431 |
taggccatcctatgct |
446 |
Q |
| |
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||||||||||| |||| |
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| T |
11978185 |
taggccatcctttgct |
11978200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 147 - 446
Target Start/End: Original strand, 11982537 - 11982834
Alignment:
| Q |
147 |
acacattttgttattaaaccacataacatagtactaatcaaaaggaagacatgacttcagttctatgatagaattggccagatggacttccattgggaag |
246 |
Q |
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| T |
11982537 |
acacattttgttcttaaaccacataacatagtactaatcaaaaggcaga---gacttcagtccggttatagaatcggccagatggacttccattgggaag |
11982633 |
T |
|
| Q |
247 |
caatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattg |
346 |
Q |
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| T |
11982634 |
caatgctagcttgacaacactagcagcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattg |
11982733 |
T |
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| Q |
347 |
atgcataaagtaggaaaattcttagcaagaattcttgtat-agcattcatagcagctttagacaagacataagcaccaccagttttaggccatcctatgc |
445 |
Q |
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| T |
11982734 |
atgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttagacaagacataagcaccaccagttttaggccatcctttgc |
11982833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 250 - 407
Target Start/End: Original strand, 11972194 - 11972352
Alignment:
| Q |
250 |
tgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattgatg |
349 |
Q |
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||||||||||||||||||| | |||||||||||| | ||||| | ||| |||| ||||||||||||| ||| |||||||||||||| |||||||||| |
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| T |
11972194 |
tgctagcttcacaacactaacagcaccttcttcaaccgttaacaaaccgttattggcagttatatctgttatggtataaccagggcaaacactattgatg |
11972293 |
T |
|
| Q |
350 |
cataaagtaggaaaattcttagcaagaattcttgtata-gcattcatagcagctttaga |
407 |
Q |
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|||| ||||||||| || |||||||||||||||||||| |||||||||||||||||||| |
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| T |
11972294 |
catatagtaggaaattttttagcaagaattcttgtatatgcattcatagcagctttaga |
11972352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 406
Target Start/End: Original strand, 12002655 - 12002835
Alignment:
| Q |
227 |
gatggacttccattgggaagcaatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacat |
326 |
Q |
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|||||||| ||||||||||||| ||||| | | ||| | ||| ||||||||||| | || |||| ||| |||||| |||||||||| || |||||| |
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| T |
12002655 |
gatggactaccattgggaagcagtgctaacctaacaggatgagcagcaccttcttccactgtgaagaaaccggtattagcagttatatcggttttgacat |
12002754 |
T |
|
| Q |
327 |
aaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtat-agcattcatagcagctttag |
406 |
Q |
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| T |
12002755 |
aaccagggcaaacacaattgatgcagaagttaggatacttctttgcagtaattcttgtgtaagcattcatagaagctttag |
12002835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 406
Target Start/End: Original strand, 11986582 - 11986775
Alignment:
| Q |
214 |
atagaattggccagatggacttccattgggaagcaatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttata |
313 |
Q |
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|||||| |||||||||||||| || ||||||| ||||||| | | || | ||| ||||||||||| | || |||| ||| |||||| |||||||| |
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| T |
11986582 |
atagaagtggccagatggactaccgctgggaagtaatgctaacctaaccggatgagcagcaccttcttctaccgtgaagaaaccggtattagcagttata |
11986681 |
T |
|
| Q |
314 |
tctgtgatgacataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtata-gcattcatagcagctttag |
406 |
Q |
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|| || |||||||||||||||||| || ||||||||| || ||||| | ||||| ||| ||||||||| || |||||||||| |||||||| |
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| T |
11986682 |
tcggttttgacataaccagggcaaacacaattgatgcagaagttaggatacttctttgcagtaattcttgtgtaggcattcatagaagctttag |
11986775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 405
Target Start/End: Original strand, 12007944 - 12008060
Alignment:
| Q |
290 |
aagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtata-g |
388 |
Q |
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|||||||| |||||| |||||||||| || |||||||||||||||||| || ||||||||| ||| ||| | || || |||| |||||||||||| | |
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| T |
12007944 |
aagagaccggtattagcagttatatcggttttgacataaccagggcaaacacaattgatgcagaaaccagggtacttttttgcaataattcttgtatagg |
12008043 |
T |
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| Q |
389 |
cattcatagcagcttta |
405 |
Q |
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| T |
12008044 |
cattcatagaagcttta |
12008060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11977754 - 11977797
Alignment:
| Q |
1 |
catataaatactttccttaatatagaaaacttgatgtagcaact |
44 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11977754 |
catataaatactttccttaatctagaaaacttgatgtagcaact |
11977797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 406
Target Start/End: Original strand, 11996240 - 11996324
Alignment:
| Q |
323 |
acataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtata-gcattcatagcagctttag |
406 |
Q |
| |
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|||||||||||||||| || ||||||||| ||| | ||| | ||||| ||||||||| ||||||| |||||||||| |||||||| |
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| T |
11996240 |
acataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaagaattattgtataggcattcatagaagctttag |
11996324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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