View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_31 (Length: 451)
Name: NF11928_low_31
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 122 - 446
Target Start/End: Original strand, 16992745 - 16993066
Alignment:
| Q |
122 |
ttatcagcatcagaatcaacagagtgttcttcactttcaccatactcatctgaatttatcgaaatcaggttatcttgtgccccacacttttcatcaacaa |
221 |
Q |
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| T |
16992745 |
ttatcaggatcagaatcaacagagtgttcttcactttcaccatactcatctgaatttatcgaaatcaggttatcttgtgccccacacttttcatcaacaa |
16992844 |
T |
|
| Q |
222 |
actttccatctttagcatcaaaatcaccacttcctccactttcaccaccaccctcagacatcttctcatcactatgttccaacccttcttcaccaacatc |
321 |
Q |
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| T |
16992845 |
actttccatctttagcatcaaaatcac---ttcctccactttcaccaccaccctcagacatcttctcatcactatgttccaacccttcttcaccaacatc |
16992941 |
T |
|
| Q |
322 |
ttcatattcatcatcatcgatggaaattacctcggcatctgcaggaacaacaaaaggttcttcagtcatctttcnnnnnnnagaaccagaaacatattcc |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16992942 |
ttcatattcatcatcatcgatggaaattacctcggcatctgcaggaacaacaaaaggttcttcagtcatctttctttttttagaaccagaaacatattcc |
16993041 |
T |
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| Q |
422 |
aaacccttatcttcttcatctctct |
446 |
Q |
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|||||||||||||||||||| |||| |
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| T |
16993042 |
aaacccttatcttcttcatcactct |
16993066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 16992643 - 16992716
Alignment:
| Q |
17 |
attataaccttttcaccttgatcagaaaacctaccaattccaccactttcatcacttttaacaacatcatctgc |
90 |
Q |
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| T |
16992643 |
attataaccttttcaccttgatcagaaaacctaccaattcccccactttcatcacttttaacaacatcatctgc |
16992716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 10601293 - 10601253
Alignment:
| Q |
203 |
ccacacttttcatcaacaaactttccatctttagcatcaaa |
243 |
Q |
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| T |
10601293 |
ccacacttttcgtcaacaaactttccatctttcgcatcaaa |
10601253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 16969214 - 16969275
Alignment:
| Q |
324 |
catattcatcatcatcgatggaaattacctcggcatctgcaggaacaacaaaaggttcttca |
385 |
Q |
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|||| ||||||| || ||||||||||||| |||| || ||||||| ||||||||||||||| |
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| T |
16969214 |
cataatcatcatgttcaatggaaattaccttggcaccttcaggaaccacaaaaggttcttca |
16969275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 277 - 446
Target Start/End: Complemental strand, 35262418 - 35262249
Alignment:
| Q |
277 |
agacatcttctcatcactatgttccaacccttcttcaccaacatcttcatattcatcatcatcgatggaaattacctcggcatctgcaggaacaacaaaa |
376 |
Q |
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||||||||| ||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
35262418 |
agacatcttgtcatcactatgctctgaaccttcttgaccaacatcttcatattcatcatcatcgatggaaactacctcagcatctgcaggaacaacaaaa |
35262319 |
T |
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| Q |
377 |
ggttcttcagtcatctttcnnnnnnnagaaccagaaacatattccaaacccttatcttcttcatctctct |
446 |
Q |
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|||||||| ||||||| | ||||| ||||||||| ||||| ||||||||||||||||| |||| |
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| T |
35262318 |
ggttcttcgttcatcttcctttttttagaacgagaaacatagtccaaccccttatcttcttcatcactct |
35262249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 35262538 - 35262417
Alignment:
| Q |
121 |
attatcagcatcagaatcaacagagtgttcttca---ctttcaccatactcatctgaatttatcgaaatcaggttatcttgtgccc---cacacttttca |
214 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||| ||| |||| |||||| |
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| T |
35262538 |
attatcagcatcagaatcaacaaagtgttcttcatcactttcaccatactcatctgaacttatcgaaaccgggttatcttgttccctctcacaattttca |
35262439 |
T |
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| Q |
215 |
tcaacaaactttccatctttag |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
35262438 |
tcaacaaactttccatctttag |
35262417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 35262654 - 35262596
Alignment:
| Q |
17 |
attataaccttttcaccttgatcagaaaacctaccaattccaccactttcatcactttt |
75 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
35262654 |
attataaccttttcacctttatcagaaaacctaccaattcccccactttcatcactttt |
35262596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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