View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_32 (Length: 438)

Name: NF11928_low_32
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_32
NF11928_low_32
[»] chr2 (3 HSPs)
chr2 (2-427)||(31623182-31623604)
chr2 (9-61)||(31607232-31607284)
chr2 (9-62)||(31618659-31618712)
[»] chr8 (5 HSPs)
chr8 (139-215)||(16221874-16221950)
chr8 (140-215)||(40114431-40114506)
chr8 (139-214)||(41529018-41529093)
chr8 (137-215)||(36755191-36755269)
chr8 (140-215)||(24044244-24044317)
[»] chr5 (4 HSPs)
chr5 (137-215)||(32259395-32259473)
chr5 (139-214)||(42631240-42631315)
chr5 (140-215)||(9022816-9022891)
chr5 (72-113)||(1082418-1082459)
[»] scaffold0114 (1 HSPs)
scaffold0114 (139-215)||(34503-34579)
[»] chr3 (1 HSPs)
chr3 (139-215)||(50239341-50239417)
[»] chr1 (2 HSPs)
chr1 (137-215)||(49878060-49878138)
chr1 (143-215)||(45920630-45920702)
[»] scaffold0284 (1 HSPs)
scaffold0284 (139-215)||(2980-3056)
[»] chr6 (1 HSPs)
chr6 (138-215)||(14211598-14211675)
[»] chr4 (2 HSPs)
chr4 (139-215)||(6551989-6552065)
chr4 (140-215)||(312160-312235)
[»] scaffold0211 (1 HSPs)
scaffold0211 (143-215)||(20612-20687)
[»] chr7 (2 HSPs)
chr7 (71-117)||(30153146-30153192)
chr7 (140-209)||(7939633-7939702)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 2 - 427
Target Start/End: Complemental strand, 31623604 - 31623182
Alignment:
Q  2 atttcagttttctttcattttaatgaagacgtagaatgaattggcaaatggattggaaataatgagcaagatcctcttcatttaacaaactaaatggaat 101  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  31623604 atttcagttttctttcattttaatgaagacatagaatgaattggcaaatggattggaaataacgagcaagatcctcttcatttaacaaactaaatggagt 31623505  T
Q  102 atgcaatttaaagagaactagtatggacacccgcagactagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaa 201  Q
    |||||||||||||||||||||| ||||||||| |    |||||||||| | ||||||||||||| |  ||||| || |||||||||||||||||||||||    
T  31623504 atgcaatttaaagagaactagtgtggacacccacgagttagaatttcgtcatagttgagggagata--attatgatttatctagtgtcagttaaattcaa 31623407  T
Q  202 acatgggataaaaccacctttattcaactaaaacaagattttacaccgattcatgctaaaacgatatgcatttgtgannnnnnnncgcaagccatttgtt 301  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||        ||||| |||||||||    
T  31623406 acatgggataaaaccacatttattcaactaaaacaggattttacaccgattcatgctaaaccgatatgcatttgtga-tttttttcgcaaaccatttgtt 31623308  T
Q  302 tgtagtataaacaaaaatgcacttttgaagcaactttcctttaaaattgacaacttacacatttaaacacactcagtaaaacgttgattttcatccaacg 401  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  31623307 tgtagtataaaaaaaaatgcacttttgaagcaactttcctttaaaattaacaacttacacatttaaacacactctttaaaacgttgattttcatctaacg 31623208  T
Q  402 gggttggagaccttccatctctgctc 427  Q
    |||||||||||||||||||| |||||    
T  31623207 gggttggagaccttccatctgtgctc 31623182  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 31607284 - 31607232
Alignment:
Q  9 ttttctttcattttaatgaagacgtagaatgaattggcaaatggattggaaat 61  Q
    |||||||||||||||||||||||||| | ||||||| ||||  ||||||||||    
T  31607284 ttttctttcattttaatgaagacgtaaactgaattgtcaaaaagattggaaat 31607232  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 31618712 - 31618659
Alignment:
Q  9 ttttctttcattttaatgaagacgtagaatgaattggcaaatggattggaaata 62  Q
    |||||||||||||||||||||||||| |   || ||||||||||||| ||||||    
T  31618712 ttttctttcattttaatgaagacgtaaatcaaagtggcaaatggatttgaaata 31618659  T

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Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 16221950 - 16221874
Alignment:
Q  139 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    ||||||||||| | |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  16221950 ctagaatttcgtcatagttgagggagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaac 16221874  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 40114506 - 40114431
Alignment:
Q  140 tagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    |||||||||| | |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  40114506 tagaatttcgtcatagttgagggagacaatattatgatgtatttagtgtcagttaaattcaaacatgggataaaac 40114431  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 41529093 - 41529018
Alignment:
Q  139 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaa 214  Q
    ||||||||||| | |||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  41529093 ctagaatttcgtcatagtcgagggagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaa 41529018  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 36755269 - 36755191
Alignment:
Q  137 gactagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    ||||| ||||||| | |||||||||||||||||| ||| || |||  |||||||||||||||||||||||| |||||||    
T  36755269 gactaaaatttcgtcatagttgagggagacaataatatgatgtattcagtgtcagttaaattcaaacatggaataaaac 36755191  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 24044244 - 24044317
Alignment:
Q  140 tagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    |||||||||| | ||||| | ||||| ||||||||||| ||||  |||| ||||||||||||||||||||||||||    
T  24044244 tagaatttcgtcatagttaaaggagataatattataatgtatc--gtgttagttaaattcaaacatgggataaaac 24044317  T

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Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 32259473 - 32259395
Alignment:
Q  137 gactagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    ||||| ||||||| | |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  32259473 gactaaaatttcgtcatagttgagggagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaac 32259395  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 42631240 - 42631315
Alignment:
Q  139 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaa 214  Q
    ||||||||||  | |||||||||||||||||||||  || |||||| |||||||||||||||||||||||||||||    
T  42631240 ctagaatttcatcatagttgagggagacaatattacgatgtatctaatgtcagttaaattcaaacatgggataaaa 42631315  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 9022816 - 9022891
Alignment:
Q  140 tagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    |||||||||| | ||||||| | |||||||||||| || ||| ||||||||||||||||||||||||| |||||||    
T  9022816 tagaatttcgtcatagttgaagaagacaatattatgatgtatttagtgtcagttaaattcaaacatggtataaaac 9022891  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 1082418 - 1082459
Alignment:
Q  72 atcctcttcatttaacaaactaaatggaatatgcaatttaaa 113  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||    
T  1082418 atcctcttcattttacaaaataaatggaagatgcaatttaaa 1082459  T

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Target: scaffold0114 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 34503 - 34579
Alignment:
Q  139 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    ||||||||||| | ||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  34503 ctagaatttcgtcatagttgatggagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaac 34579  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 50239341 - 50239417
Alignment:
Q  139 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    ||||||||||| | | |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  50239341 ctagaatttcgtcatggttgagggagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaac 50239417  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 49878060 - 49878138
Alignment:
Q  137 gactagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    ||||||||||||| | |||||||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||    
T  49878060 gactagaatttcgtcatagttgagggagacaatattatgacgtatatagtgtcagttaaattcaaacatgggataaaac 49878138  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 45920702 - 45920630
Alignment:
Q  143 aatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    ||||||| | |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  45920702 aatttcgtcatagttgagggagacaatattatgatgtatttagtgtcagttaaattcaaacatgggataaaac 45920630  T

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Target: scaffold0284 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 3056 - 2980
Alignment:
Q  139 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    ||||||||||| |  |||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  3056 ctagaatttcgtcaaagttgaggtagacaatattatgatgtatctagtgtcagttaaattcaaacatgggataaaac 2980  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 14211675 - 14211598
Alignment:
Q  138 actagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    |||||||||||  | |||||||||||||||||||||| || |||||||||| |||||||||||||||||||| |||||    
T  14211675 actagaatttcatcatagttgagggagacaatattatgatgtatctagtgttagttaaattcaaacatgggacaaaac 14211598  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 6551989 - 6552065
Alignment:
Q  139 ctagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    ||||||||||  | |||| ||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||||    
T  6551989 ctagaatttcatcatagtcgagggagacaatattatgatgtatgtagtgtcagttaaattcaaacatgagataaaac 6552065  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 312160 - 312235
Alignment:
Q  140 tagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatgggataaaac 215  Q
    |||||||||| | ||||||||||| |||||||||| || ||| || |||||||||||||||||| |||||||||||    
T  312160 tagaatttcgtcatagttgagggatacaatattatgatgtatttattgtcagttaaattcaaacgtgggataaaac 312235  T

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Target: scaffold0211 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 20687 - 20612
Alignment:
Q  143 aatttcgccctagttgagggagacaatattataatatatctagt---gtcagttaaattcaaacatgggataaaac 215  Q
    ||||||| | |||||||||||||||||||||| || ||| ||||   |||||||||||||||||||||||||||||    
T  20687 aatttcgtcatagttgagggagacaatattatgatgtatgtagtagtgtcagttaaattcaaacatgggataaaac 20612  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 30153146 - 30153192
Alignment:
Q  71 gatcctcttcatttaacaaactaaatggaatatgcaatttaaagaga 117  Q
    |||||||| |||||||||||  |||||||||||||||||| ||||||    
T  30153146 gatcctctccatttaacaaaacaaatggaatatgcaatttgaagaga 30153192  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 7939633 - 7939702
Alignment:
Q  140 tagaatttcgccctagttgagggagacaatattataatatatctagtgtcagttaaattcaaacatggga 209  Q
    |||||||||| | || |||| ||||| |||| ||| || ||||  |||||||||||||||||||||||||    
T  7939633 tagaatttcgtcataattgaaggagataatagtatgatgtatccggtgtcagttaaattcaaacatggga 7939702  T

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