View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_33 (Length: 437)
Name: NF11928_low_33
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Complemental strand, 33422032 - 33421615
Alignment:
| Q |
20 |
taattatggttttcttgactataggactgtcattgtaattgtaactgtaatttagttaaatcacaaaaaatttgctttgaaaatttgcagggatggattt |
119 |
Q |
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| T |
33422032 |
taattatggttttcttgactataggactgtcattgtaattgtaactgtaatttagttgaatcacaaaaattttgctttgaaaatttgcagggatggattt |
33421933 |
T |
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| Q |
120 |
agaatgtggaagttatttgacggaccacgcaaaatcggcagtgcaacagaaaaaattacctatagttcgaatagaccgtgcccttcacaatctattttca |
219 |
Q |
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| T |
33421932 |
agaatgtggaagttatttgacagaccatgcaaaatcggcagtgcaacagaaaaaattacctatagttcgaatagaccgtgcccttcacaatctattttca |
33421833 |
T |
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| Q |
220 |
attagaataaggctaggccaatttgatggaaatccagcaaagcttccatttggaatgattggtcccaaccatgtctgttccgaaaatcatttatatctag |
319 |
Q |
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| T |
33421832 |
attagaataaggctaggccaatttgatggaaatccagcaaagcttccatttggaatgattggtcccaaccatgtctgttccgaaaatcatttatatctag |
33421733 |
T |
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| Q |
320 |
ctcttgaagctgcaagaaatggcattgtccttttaaagaacactgcttcacttcttccacttccaaaaactagtatttccttagcagtgataggtcctaa |
419 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33421732 |
ctcttgaagctgcaagaaacggcattgtccttttaaagaacactgcttcacttcttccacttccaaaaactagtatttccttagcagtgataggtcctaa |
33421633 |
T |
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| Q |
420 |
tgcctttgcttctcctct |
437 |
Q |
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| T |
33421632 |
tgccaatgcttcccctct |
33421615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 385
Target Start/End: Complemental strand, 25925774 - 25925558
Alignment:
| Q |
169 |
aaaaaattacctatagttcgaatagaccgtgcccttcacaatctattttcaattagaataaggctaggccaatttgatggaaatccagcaaagcttccat |
268 |
Q |
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|||||| |||||||| || ||| ||||||||||| |||||||| ||| | ||||||||||| |||||| |||||||| |||||| |||| || | || |
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| T |
25925774 |
aaaaaagtacctatatctcaaatcgaccgtgccctacacaatctgtttaccattagaataagactaggcttgtttgatgggaatccaacaaaactccaat |
25925675 |
T |
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| Q |
269 |
ttggaatgattggtcccaaccatgtctgttccgaaaatcatttatatctagctcttgaagctgcaagaaatggcattgtccttttaaagaacactgcttc |
368 |
Q |
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| T |
25925674 |
atggcagaattggtccaaatcaagtatgctctaaagaaaacctagaccttgctcttgaagctgcaagaagtggcattgtacttttaaaaaacactgcctc |
25925575 |
T |
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| Q |
369 |
acttcttccacttccaa |
385 |
Q |
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| |||| |||||||||| |
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| T |
25925574 |
aattctcccacttccaa |
25925558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 25885501 - 25885435
Alignment:
| Q |
319 |
gctcttgaagctgcaagaaatggcattgtccttttaaagaacactgcttcacttcttccacttccaa |
385 |
Q |
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| T |
25885501 |
gctcttgaagctgcaagaagtggcattgtacttttaaaaaacactgcctcaattctcccacttccaa |
25885435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 25959767 - 25959871
Alignment:
| Q |
151 |
aaatcggcagtgcaacagaaaaaattacctatagttcgaatagaccgtgcccttcacaatctattttcaattagaataaggctaggccaatttgatggaa |
250 |
Q |
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| T |
25959767 |
aaatcagcagtgttacaaaaaaaagtaccaatatctcaaatcgaccgtgccctacacaatctattctccattagaataaggctaggattatttgatggac |
25959866 |
T |
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| Q |
251 |
atcca |
255 |
Q |
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||||| |
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| T |
25959867 |
atcca |
25959871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 385
Target Start/End: Complemental strand, 25907129 - 25907063
Alignment:
| Q |
319 |
gctcttgaagctgcaagaaatggcattgtccttttaaagaacactgcttcacttcttccacttccaa |
385 |
Q |
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||||| ||||||||||||| ||||||||| ||||| || |||||||| ||| |||| |||||||||| |
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| T |
25907129 |
gctctagaagctgcaagaagtggcattgtacttttgaaaaacactgcctcaattctcccacttccaa |
25907063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 25959933 - 25960003
Alignment:
| Q |
317 |
tagctcttgaagctgcaagaaatggcattgtccttttaaagaacactgcttcacttcttccacttccaaaa |
387 |
Q |
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| T |
25959933 |
tagctctagaagctgcaagaagcggcattgtacttttaaaaaacgctgcctcaattctcccacttccaaaa |
25960003 |
T |
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