View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_34 (Length: 436)

Name: NF11928_low_34
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_34
NF11928_low_34
[»] chr4 (2 HSPs)
chr4 (144-436)||(37029297-37029589)
chr4 (55-140)||(48292031-48292117)
[»] chr3 (1 HSPs)
chr3 (20-140)||(34948721-34948844)
[»] chr8 (3 HSPs)
chr8 (43-88)||(5726462-5726507)
chr8 (51-127)||(11630665-11630741)
chr8 (103-140)||(5726424-5726461)
[»] chr7 (3 HSPs)
chr7 (104-140)||(16650621-16650657)
chr7 (104-140)||(17624981-17625017)
chr7 (55-140)||(40066729-40066808)
[»] chr2 (1 HSPs)
chr2 (51-123)||(10376365-10376437)
[»] chr1 (1 HSPs)
chr1 (104-145)||(38114049-38114090)
[»] chr6 (1 HSPs)
chr6 (37-127)||(12798612-12798701)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 144 - 436
Target Start/End: Complemental strand, 37029589 - 37029297
Alignment:
Q  144 aatttgataccacaatatcatgttgtccatcgtgtcgatttggagtaacttcaatgcatctgcatccattacatttatttaagttccttaaaaggaatcc 243  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37029589 aatttcataccacaatatcatgttgtccatcgtgtctatttggagtaacttcaatgcatctgcatccattacatttatttaagttctttaaaaggaatcc 37029490  T
Q  244 cgcataatttttacaatgttttgtacttgtcaattatttaaacaacttttctatatcttctaaatatttgtccaactcatcaaaaactctaaaatggttt 343  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37029489 cgcataatttttacaatgttttgtacttcttaattatttaaacaacttttctatatcttctaaatatttgtccaactcatcaaaaactctaaaatggttt 37029390  T
Q  344 ccaccaaactctcaaatatattcataaatccagcatggaaggaaaattgtcatcgccatgcagaggaacgtctttgagtttggaatcgttcat 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37029389 ccaccaaactctcaaatatattcataaatccagcatggaaggaaaattgtcatcgccatgcagaggaacgtctttgagtttgggatcgttcat 37029297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 48292031 - 48292117
Alignment:
Q  55 tattttggttgaagaagacaaaataaat---tgtcacgtggcagtggtgtatggggtggatgaattaaaagggtgttcatcaatcttta 140  Q
    ||||||||||||||||||||||| |||    || ||||| ||||||||  | ||| |||||||||||||||||||||||||||||||||    
T  48292031 tattttggttgaagaagacaaaaaaaaaaactgccacgtagcagtggt--acgggatggatgaattaaaagggtgttcatcaatcttta 48292117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 34948844 - 34948721
Alignment:
Q  20 ggaacaaaagaatgtaaaggttatattttata---tattattttggttgaagaagacaaaataaattgtcacgtggcagtggtgtatggggtggatgaat 116  Q
    |||||||||||||| ||| |||||||||||||   ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||    
T  34948844 ggaacaaaagaatggaaatgttatattttatactatattattttggttgaagaagacaaaataaattgccacatggcagtggtgtatagggtgaatgaat 34948745  T
Q  117 taaaagggtgttcatcaatcttta 140  Q
    ||||||||||||||||||||||||    
T  34948744 taaaagggtgttcatcaatcttta 34948721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 5726507 - 5726462
Alignment:
Q  43 tattttatatattattttggttgaagaagacaaaataaattgtcac 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5726507 tattttatatattattttggttgaagaagacaaaataaattgtcac 5726462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 11630665 - 11630741
Alignment:
Q  51 atattattttggttgaagaagacaaaataaattgtcac-gtggcagtggtgtatggggtggatgaattaaaagggtgt 127  Q
    ||||||||||| ||||| ||||||||| |||||| ||| |||| ||||||||| |||||||||| |||||||||||||    
T  11630665 atattattttgtttgaataagacaaaaaaaattgccacagtgg-agtggtgtaaggggtggatggattaaaagggtgt 11630741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 5726461 - 5726424
Alignment:
Q  103 tggggtggatgaattaaaagggtgttcatcaatcttta 140  Q
    |||||||  |||||||||||||||||||||||||||||    
T  5726461 tggggtgattgaattaaaagggtgttcatcaatcttta 5726424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 16650621 - 16650657
Alignment:
Q  104 ggggtggatgaattaaaagggtgttcatcaatcttta 140  Q
    |||||||||||||||||||||||||||||||||||||    
T  16650621 ggggtggatgaattaaaagggtgttcatcaatcttta 16650657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 17624981 - 17625017
Alignment:
Q  104 ggggtggatgaattaaaagggtgttcatcaatcttta 140  Q
    |||||||||||||||||||||||||||||||||||||    
T  17624981 ggggtggatgaattaaaagggtgttcatcaatcttta 17625017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 40066729 - 40066808
Alignment:
Q  55 tattttggttgaagaagacaaaataaattgtcacgtggcagtggtgtatggggtggatgaattaaaagggtgttcatcaatcttta 140  Q
    ||||||||||||||||    ||| ||| || ||||| ||||||||  |||| ||||||||||||||||| ||||||||||||||||    
T  40066729 tattttggttgaagaa----aaaaaaaatgccacgtagcagtggt--atggagtggatgaattaaaaggttgttcatcaatcttta 40066808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 10376365 - 10376437
Alignment:
Q  51 atattattttggttgaagaagacaaaataaattgtcac-gtggcagtggtgtatggggtggatgaattaaaagg 123  Q
    ||||||||||| ||||| ||||||||| |||||| ||| |||| ||||||||| |||||||||| |||||||||    
T  10376365 atattattttgtttgaataagacaaaaaaaattgccacagtgg-agtggtgtaaggggtggatggattaaaagg 10376437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 38114049 - 38114090
Alignment:
Q  104 ggggtggatgaattaaaagggtgttcatcaatctttatccaa 145  Q
    |||||||||||||||||||||||||||||||| |||| ||||    
T  38114049 ggggtggatgaattaaaagggtgttcatcaatttttacccaa 38114090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 12798612 - 12798701
Alignment:
Q  37 aggttatattttatatattattttggttgaagaagacaaaataaa-ttgtcac-gtggcagtggtgtatggggtggatgaattaaaagggtgt 127  Q
    ||||||||||||||||  ||||||| ||||| ||||||||| ||| ||||||  |||| ||||||||| ||| |||||| |||||||||||||    
T  12798612 aggttatattttatat--tattttgtttgaataagacaaaaaaaaattgtcatagtgg-agtggtgtaagggatggatggattaaaagggtgt 12798701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University