View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_36 (Length: 432)
Name: NF11928_low_36
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 34 - 418
Target Start/End: Complemental strand, 1299693 - 1299309
Alignment:
| Q |
34 |
gagggaaagggcagcaggtgatccaaatccctaattatagtttgcatggtgtaannnnnnnctctatagattcttgttaatagagagataaccataattt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |
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| T |
1299693 |
gagggaaagggcagcaggtgatccaaatccctaattatagtttgcatggtgtaatttttttctctatcgattcttgttaatagagaggtaaccataattt |
1299594 |
T |
|
| Q |
134 |
gtgatactctcaaacctcaaacattatgtatgtgtttggattagcttttgcaatgcaaatatcaagtcccaagataagtttgatgtggaaatacccaaac |
233 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||| ||||||| ||||||||| || ||||| | |||| |
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| T |
1299593 |
gtgacactctcaaacctcaaacattatatatgtgtttggattagtttttgcagtacaaatatcaaatcccaaggcaagtttgatatgaaaatatcgaaac |
1299494 |
T |
|
| Q |
234 |
tacaaaagtaagtttttatgaaaacgtgaaaattcactatgattttttaaaaaccactgctaaaccaaacgtgcactagataagtagatacagatctttg |
333 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1299493 |
tacaaaagtaagcttttatgaaaacgtgaaaattcactacgattttttaaaaaccactgctaaaccaaacgtgcactagataagtagatacagatctttg |
1299394 |
T |
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| Q |
334 |
aactgaacttcaaaatttagttcgccagaaagtttataaattcttccgtcaacccaactccattggtgtttgcaccatgttcatg |
418 |
Q |
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| T |
1299393 |
aactgaacttcaaaatttagttcgccaaaaagtttataaattcttccgtcaacccaactccattggtgtttgcaccatgttcatg |
1299309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 311
Target Start/End: Original strand, 15504203 - 15504353
Alignment:
| Q |
161 |
gtatgtgtttggattagcttttgcaatgcaaatatcaagtcccaagataagtttgatgtggaaatacccaaactacaaaagtaagtttttatgaaaacgt |
260 |
Q |
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| T |
15504203 |
gtatgtgtttggattagcttttacagtgcaaatatcacgtttcgaggtaagctggacgtggaaatcctgaagctacaaaagtaagcttttgtgaaaacgt |
15504302 |
T |
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| Q |
261 |
gaaaattcactatgattttttaaaaaccactgctaaaccaaacgtgcacta |
311 |
Q |
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|||||| ||| ||||||| || |||||| ||||||||||||| |||||| |
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| T |
15504303 |
gaaaatccaccgtgattttctagtaaccaccgctaaaccaaacgagcacta |
15504353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 311
Target Start/End: Original strand, 17302306 - 17302452
Alignment:
| Q |
165 |
gtgtttggattagcttttgcaatgcaaatatcaagtcccaagataagtttgatgtggaaatacccaaactacaaaagtaagtttttatgaaaacgtgaaa |
264 |
Q |
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| T |
17302306 |
gtgtttggattagcttttgcaatgcaaatatcacatcccggggcaagcttgacgtggaaattctaaagctacaaaagcaagcttttgtgtaaacgtgaaa |
17302405 |
T |
|
| Q |
265 |
attcactatgattttttaaaaaccactgctaaaccaaacgtgcacta |
311 |
Q |
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| T |
17302406 |
attcactgtgattctacagaaaccaccgctaaaccaaacgagcacta |
17302452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 297
Target Start/End: Complemental strand, 51305388 - 51305258
Alignment:
| Q |
166 |
tgtttggattagcttttgcaatgcaaatatcaagtcccaagataagtttgatgtggaaatacccaaactacaaaagtaagtttttatgaaaacgtgaaaa |
265 |
Q |
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|||||||||||||||||||| || |||||||| ||||| || ||||| |||||| |||| | ||||||| |||| |||||||| ||||||| |||||| |
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| T |
51305388 |
tgtttggattagcttttgcagtgaaaatatcacgtcccgaggcaagttggatgtgaaaattctcaaacta-aaaaacaagtttttgtgaaaacatgaaaa |
51305290 |
T |
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| Q |
266 |
ttcactatgattttttaaaaaccactgctaaa |
297 |
Q |
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||||| ||||| || ||||||||| |||||| |
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| T |
51305289 |
ttcaccgtgattcttaaaaaaccaccgctaaa |
51305258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 34113278 - 34113423
Alignment:
| Q |
164 |
tgtgtttggattagcttttgcaatgcaaatatcaagtcccaagataagtttgatgtggaaatacccaaactacaaaagtaagtttttatgaaaacgtgaa |
263 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||| ||||| |||||| | ||||| ||||| || ||||||||||| |||| |||||||||||| |
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| T |
34113278 |
tgtgtttgaattagcttttgcattgcgaatatcacgtcccgagataaactggatgtagaaatcttgaaggtacaaaagtaaacttttgtgaaaacgtgaa |
34113377 |
T |
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| Q |
264 |
aattcactatgattttttaaaaaccactgctaaaccaaacgtgcac |
309 |
Q |
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||| ||| ||||| | || |||||| |||||||||||||| |||| |
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| T |
34113378 |
aatccaccgtgattctctagaaaccattgctaaaccaaacgagcac |
34113423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 47492066 - 47492135
Alignment:
| Q |
234 |
tacaaaagtaagtttttatgaaaacgtgaaaattcactatgattttttaaaaaccactgctaaaccaaac |
303 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| ||| | ||| |||||||||||| | |||||||||| |
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| T |
47492066 |
tacaaaagtaagattttgtgaaaacgtgaaaatccaccgtaattctttaaaaaccaccgttaaaccaaac |
47492135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 11346147 - 11346111
Alignment:
| Q |
161 |
gtatgtgtttggattagcttttgcaatgcaaatatca |
197 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
11346147 |
gtatgtgtttggattagcttttgcaagacaaatatca |
11346111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 44701626 - 44701521
Alignment:
| Q |
165 |
gtgtttggattagcttttgcaatgcaaatatcaagtcccaagataagtttgatgtggaaatacccaaactacaa----aagtaagtttttatgaaaacgt |
260 |
Q |
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||||||||||||||||||||| || |||||||| ||||| || |||| | || |||||||| | ||| ||||| ||||||| |||||||||||||| |
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| T |
44701626 |
gtgtttggattagcttttgcagtgtaaatatcacgtcccgagttaagctggacgtggaaatcctaaaagtacaaaagcaagtaagcttttatgaaaacgt |
44701527 |
T |
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| Q |
261 |
gaaaat |
266 |
Q |
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||||| |
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| T |
44701526 |
aaaaat |
44701521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 6726009 - 6725949
Alignment:
| Q |
243 |
aagtttttatgaaaacgtgaaaattcactatgattttttaaaaaccactgctaaaccaaac |
303 |
Q |
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|||||||| ||||||||||||||| ||| |||||| | || ||||||| |||||| ||||| |
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| T |
6726009 |
aagtttttgtgaaaacgtgaaaatccaccatgattctatagaaaccaccgctaaatcaaac |
6725949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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