View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_38 (Length: 424)

Name: NF11928_low_38
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_38
NF11928_low_38
[»] chr2 (10 HSPs)
chr2 (166-409)||(7723605-7723843)
chr2 (8-166)||(12414056-12414213)
chr2 (8-166)||(12426116-12426273)
chr2 (8-166)||(4731902-4732059)
chr2 (221-409)||(7729818-7729993)
chr2 (80-165)||(4731715-4731800)
chr2 (228-409)||(7715896-7716071)
chr2 (99-167)||(12413836-12413904)
chr2 (99-167)||(12425896-12425964)
chr2 (166-216)||(7729748-7729798)
[»] chr3 (13 HSPs)
chr3 (8-167)||(33794432-33794589)
chr3 (8-165)||(40560678-40560834)
chr3 (8-167)||(14783733-14783891)
chr3 (8-167)||(5048002-5048160)
chr3 (8-166)||(31724352-31724509)
chr3 (9-166)||(20124654-20124811)
chr3 (11-157)||(2439992-2440137)
chr3 (80-166)||(5048294-5048380)
chr3 (88-167)||(2439768-2439847)
chr3 (97-169)||(14784027-14784100)
chr3 (99-166)||(31724657-31724724)
chr3 (86-167)||(40560472-40560552)
chr3 (86-165)||(33794729-33794806)
[»] chr1 (11 HSPs)
chr1 (8-167)||(7709921-7710079)
chr1 (8-166)||(34492448-34492605)
chr1 (8-167)||(52331626-52331784)
chr1 (8-165)||(37646876-37647032)
chr1 (80-166)||(52331406-52331492)
chr1 (80-165)||(7709700-7709785)
chr1 (31-164)||(13618343-13618475)
chr1 (88-164)||(13618582-13618658)
chr1 (100-165)||(34492237-34492302)
chr1 (99-166)||(13618255-13618322)
chr1 (98-166)||(37646741-37646809)
[»] chr8 (4 HSPs)
chr8 (8-167)||(3305838-3305996)
chr8 (8-166)||(3068773-3068930)
chr8 (80-166)||(3069064-3069150)
chr8 (80-166)||(3305618-3305704)
[»] chr4 (14 HSPs)
chr4 (8-166)||(41315898-41316055)
chr4 (8-166)||(42305904-42306060)
chr4 (8-167)||(23254596-23254754)
chr4 (8-173)||(20878685-20878849)
chr4 (8-174)||(15874219-15874384)
chr4 (8-167)||(38484459-38484618)
chr4 (80-165)||(23254377-23254462)
chr4 (8-167)||(55893212-55893367)
chr4 (81-167)||(42306195-42306281)
chr4 (89-167)||(41316198-41316275)
chr4 (86-166)||(15874524-15874604)
chr4 (86-166)||(55893467-55893547)
chr4 (97-165)||(38485175-38485243)
chr4 (113-165)||(20878980-20879032)
[»] chr6 (16 HSPs)
chr6 (8-166)||(33746711-33746868)
chr6 (8-168)||(16766286-16766445)
chr6 (8-167)||(6851247-6851405)
chr6 (8-167)||(16368819-16368977)
chr6 (86-163)||(20582638-20582715)
chr6 (86-165)||(16766556-16766635)
chr6 (8-139)||(20582827-20582957)
chr6 (8-166)||(11242291-11242448)
chr6 (89-166)||(29846978-29847055)
chr6 (86-167)||(11246347-11246428)
chr6 (100-167)||(33746961-33747028)
chr6 (99-166)||(16368640-16368707)
chr6 (99-166)||(29846788-29846855)
chr6 (99-166)||(6851549-6851615)
chr6 (8-47)||(29846935-29846974)
chr6 (335-409)||(31139363-31139437)
[»] chr7 (9 HSPs)
chr7 (8-165)||(24825779-24825935)
chr7 (8-166)||(32793002-32793159)
chr7 (11-166)||(11324270-11324424)
chr7 (16-166)||(37873416-37873565)
chr7 (16-176)||(37879077-37879236)
chr7 (86-166)||(24825558-24825638)
chr7 (88-165)||(32792783-32792860)
chr7 (98-167)||(9402558-9402627)
chr7 (99-167)||(11324051-11324119)
[»] scaffold0428 (2 HSPs)
scaffold0428 (8-164)||(7491-7646)
scaffold0428 (80-164)||(7765-7849)
[»] chr5 (6 HSPs)
chr5 (8-167)||(31155561-31155719)
chr5 (8-165)||(39761533-39761689)
chr5 (80-167)||(39760422-39760509)
chr5 (8-165)||(31155893-31156049)
chr5 (80-167)||(31156183-31156270)
chr5 (105-166)||(31155369-31155430)
[»] scaffold0291 (2 HSPs)
scaffold0291 (8-167)||(11274-11432)
scaffold0291 (8-166)||(10953-11110)
[»] scaffold0184 (2 HSPs)
scaffold0184 (20-165)||(7183-7328)
scaffold0184 (88-166)||(7017-7095)
[»] scaffold0032 (2 HSPs)
scaffold0032 (80-162)||(33206-33288)
scaffold0032 (12-126)||(32959-33074)
[»] scaffold1408 (1 HSPs)
scaffold1408 (88-164)||(1745-1821)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 166 - 409
Target Start/End: Original strand, 7723605 - 7723843
Alignment:
Q  166 tagatttaatttggtctaaggaggctctatttaagatatctttatttgttttggcgtttcttatcaaggataacttgtttagacgaggtatcatcaatca 265  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7723605 tagatttaatctggtctaaggaggctctatataagatatttttatttgttttggtgtttcttatcaaggataacttgtttagacgaggtatcatcaatca 7723704  T
Q  266 tgatcacagttttgtgtaactgattgtagtgcctctgaatcaacaaatcatctgnnnnnnnnnnnnnaatgtaatgtttttagtgctatttggcaccttg 365  Q
    |||||||| |||||||||| || |||||| | || |||||  ||||||||||||             ||||||||||||||||||||||||| |||||||    
T  7723705 tgatcacaattttgtgtaagtggttgtagcgtctttgaatggacaaatcatctg-----ttttttttaatgtaatgtttttagtgctatttgacaccttg 7723799  T
Q  366 ttagtcgttggattgggattttttcggtcaacccttttggtatt 409  Q
    || |||||||||||||||||||||||||||||||||||||||||    
T  7723800 ttcgtcgttggattgggattttttcggtcaacccttttggtatt 7723843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 12414056 - 12414213
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  12414056 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 12414154  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12414155 tacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 12414213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 12426116 - 12426273
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  12426116 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 12426214  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12426215 tacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 12426273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 4731902 - 4732059
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||| | |        ||||| ||||||||||||||||||||||    
T  4731902 cacgtagacattttggtgacttgtcatgacttaaatgggcccagggatatttttaaaagacatattttttt-gcggggactgatttctgaatttttattt 4732000  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4732001 tacaaggaccaaaacttaaacggaccatatttgcagggatgagtgcaatatttaagcct 4732059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 221 - 409
Target Start/End: Original strand, 7729818 - 7729993
Alignment:
Q  221 gtttcttatcaaggataacttgtttagacgaggtatcatcaatcatgatcacagttttgtgtaactgattgtagtgcctctgaatcaacaaatcatctgn 320  Q
    |||| |||||||||||| ||| |||||| |||||||||||||||| |||| ||||||||||||| || ||||||||||| |||||  ||||||||||||     
T  7729818 gtttattatcaaggataccttatttagatgaggtatcatcaatcacgatcgcagttttgtgtaagtggttgtagtgcctttgaattgacaaatcatctgt 7729917  T
Q  321 nnnnnnnnnnnnaatgtaatgtttttagtgctatttggcaccttgttagtcgttggattgggattttttcggtcaacccttttggtatt 409  Q
                  | ||  ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  7729918 t-------------tttatggtttttagtgctatttggcaccttgttcgtcgttggattgggattttttcgatcaacccttttggtatt 7729993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 4731800 - 4731715
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  4731800 gcgggaactgatttctgaatttttattttacaaggaccaaatcttaaacgggccatatttgcagggacgagtgcaatatttaagcc 4731715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 228 - 409
Target Start/End: Original strand, 7715896 - 7716071
Alignment:
Q  228 atcaaggataacttgtttagacgaggtatcatcaatcatgatcacagttttgtgtaactgattgtagtgcctctgaatcaacaaatcatctgnnnnnnnn 327  Q
    ||||||||||| ||||||||||||| |||||||||||||||||  |||||||||||| || |||||||| || |||||| | ||||||||||            
T  7715896 atcaaggataatttgtttagacgagatatcatcaatcatgatcgaagttttgtgtaagtggttgtagtgtctttgaatcgataaatcatctg------tt 7715989  T
Q  328 nnnnnaatgtaatgtttttagtgctatttggcaccttgttagtcgttggattgggattttttcggtcaacccttttggtatt 409  Q
         | ||||||||||||| ||||||||||||||||  |  | ||||||||||||||||||| ||||||||||||||||||    
T  7715990 ttttgattgtaatgtttttattgctatttggcaccttaatcattgttggattgggattttttctgtcaacccttttggtatt 7716071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 12413904 - 12413836
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||| ||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  12413904 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagccta 12413836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 12425964 - 12425896
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||| ||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  12425964 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagccta 12425896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 7729748 - 7729798
Alignment:
Q  166 tagatttaatttggtctaaggaggctctatttaagatatctttatttgttt 216  Q
    |||||| |||||||| ||||||||||| ||||||| |||||||||||||||    
T  7729748 tagattcaatttggtataaggaggctccatttaaggtatctttatttgttt 7729798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 33794589 - 33794432
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  33794589 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttt--gcggggactgatttctgaatttttattt 33794492  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33794491 tacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 33794432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 40560678 - 40560834
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||| ||||| |||| || ||||||||||||||||| ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  40560678 cacgtaggtattttagtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 40560776  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40560777 tacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 40560834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 14783891 - 14783733
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| || | |        ||||| ||||||||||||||||||||||    
T  14783891 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggcatttttaaacgaca-aatttttttgcggggactgatttctgaatttttattt 14783793  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  14783792 tacaaggaccaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagccta 14783733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 5048160 - 5048002
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  5048160 cacgtaggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagatagattttttc-gcggggactgatttctgaatttttattt 5048062  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    |||||| || |||||||||||||||||||||| || ||||||||||||||||||||||||    
T  5048061 tacaagaaccaaaacttaaacggaccatatttacaaggacgagtgcaatatttaagccta 5048002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 31724509 - 31724352
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||  || |||||||||||||||| | |        ||||| ||||||||||||||||||||||    
T  31724509 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaagggtatttttaaaagaca-aatttttttgcggggactgatttctgaatttttattt 31724411  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||||    
T  31724410 tacaaggaccaaaatttaaacgggccatatttgcatggacgagtgcaatatttaagcct 31724352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 20124811 - 20124654
Alignment:
Q  9 acgtaggcattttggtgacttatcatgacttaaatgggcac-aggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||||||||| |||| |||||||||||| | |||||||||||||||||| | |        ||||| ||||||||||||||||||||||    
T  20124811 acgtaggcattttggtgacttgtcattacttaaatgggccccaggggtatttttaaaagacatattttttt-gcggggactgatttctgaatttttattt 20124713  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20124712 tacaaagaccaaaacttaaacggaccatatttacagggacgagtgcaatatttaagcct 20124654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 2439992 - 2440137
Alignment:
Q  11 gtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttac 110  Q
    ||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||| |||        ||||| |||||||||||||||||||||||||    
T  2439992 gtaggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattttac 2440090  T
Q  111 aaggacgaaaacttaaacggaccatatttgcagggacgagtgcaata 157  Q
    ||| || |||||||||||||||||||||| || ||||||||||||||    
T  2440091 aagaaccaaaacttaaacggaccatatttacaaggacgagtgcaata 2440137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 5048294 - 5048380
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5048294 gcggggactgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 5048380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 2439847 - 2439768
Alignment:
Q  88 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2439847 tgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 2439768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 14784027 - 14784100
Alignment:
Q  97 aatttttatttt-acaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctaga 169  Q
    |||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  14784027 aatttttatttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctaga 14784100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 31724657 - 31724724
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    |||||| |||||  |||| ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  31724657 tttttaatttaccgggacaaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcct 31724724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 40560552 - 40560472
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    |||||||||||||||||| ||||||| |||| |||| | |||||   |||||||||||||||| ||||||||||||||||||    
T  40560552 actgatttctgaattttt-ttttacagggactaaaattaaaacgaggcatatttgcagggacgggtgcaatatttaagccta 40560472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 33794729 - 33794806
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    |||||||||||| |||||  |||||| |||| |||| | |||||   |||||||||||||||||||||||||||||||||    
T  33794729 actgatttctgatttttt--tttacagggactaaaattaaaacgaggcatatttgcagggacgagtgcaatatttaagcc 33794806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 7709921 - 7710079
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||        ||  | ||||||||||||||||||||||    
T  7709921 cacgtaggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagattttttt-gcaaggactgatttctgaatttttattt 7710019  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7710020 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 7710079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 34492448 - 34492605
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        |||||||||||| |||||||||||||||    
T  34492448 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagattttttt-gcgggaactgatgtctgaatttttattt 34492546  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  34492547 tacaaggaccaaaacttaaacagaccatatttgcaggaacgagtgcaatatttaagcct 34492605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 52331626 - 52331784
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| | |        ||||| |||||||||| |||||||||||    
T  52331626 cacgtaggcattttgatgacttgtcatgacttaaatgggcccaggggtatttttaaaagata-aatttttttgcggggactgatttctaaatttttattt 52331724  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52331725 tacaaggatcaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 52331784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 37646876 - 37647032
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        ||  | |||||||| |||||||||||||    
T  37646876 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacaga-tttttttgcacggactgatttttgaatttttattt 37646974  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    ||||||||| ||||||||||||  ||||||||||||  |||| |||||||||||||||    
T  37646975 tacaaggaccaaaacttaaacgagccatatttgcagaaacgaatgcaatatttaagcc 37647032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 52331492 - 52331406
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52331492 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 52331406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 7709785 - 7709700
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||    
T  7709785 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagttcaatatttaagcc 7709700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 13618343 - 13618475
Alignment:
Q  31 tcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacgg 130  Q
    ||||||||||||||||| ||||||||||||||||||| |||        || || | |||||||||| |||||||||||||||||| |||||||||||||    
T  13618343 tcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gctgggattgatttctgattttttattttacaaggaccaaaacttaaacgg 13618441  T
Q  131 accatatttgcagggacgagtgcaatatttaagc 164  Q
     |||||||||||||||||| ||||||||||||||    
T  13618442 gccatatttgcagggacgaatgcaatatttaagc 13618475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 13618582 - 13618658
Alignment:
Q  88 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagc 164  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  13618582 tgatttctgattttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagc 13618658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 34492302 - 34492237
Alignment:
Q  100 ttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34492302 tttttttttacacggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 34492237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 13618322 - 13618255
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||| ||||||| |||| |||||||||||||  |||||||||||||| |||||||||||||||||||    
T  13618322 ttttttttttacagggactaaaacttaaacgggtcatatttgcagggaagagtgcaatatttaagcct 13618255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 37646809 - 37646741
Alignment:
Q  98 atttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    |||||| ||||||| |||| ||||   ||||| | ||||||||||||||||| ||||||||||||||||    
T  37646809 attttttttttacagggactaaaatcaaaacgaagcatatttgcagggacgaatgcaatatttaagcct 37646741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 3305838 - 3305996
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||        ||||| |||||||||| |||||||||||    
T  3305838 cacgtaggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagattttttt-gcggggactgatttctaaatttttattt 3305936  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3305937 tacaaggaagaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 3305996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 3068930 - 3068773
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  3068930 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 3068832  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3068831 tacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 3068773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 3069064 - 3069150
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3069064 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 3069150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 3305704 - 3305618
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3305704 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagttcaatatttaagcct 3305618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 41316055 - 41315898
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  41316055 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 41315957  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41315956 tacaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagcct 41315898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 42306060 - 42305904
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  42306060 cacgtaggcattttggtgacttgtcatgacttaaatggg-acaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 42305963  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42305962 tacgaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 42305904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 23254596 - 23254754
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||| ||||||||||||| |||||||||||||| || |||| |||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  23254596 cacgtaggtattttggtgacttgtcatgacttaaatgagcccaggagtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 23254694  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23254695 tacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 23254754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 20878849 - 20878685
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  20878849 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagattttttt-gcggggactgatttctgaatttttattt 20878751  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctagattta 173  Q
    ||||||||| ||||||||||||| ||||||||||||||| ||||| ||| |||||||||| |||||    
T  20878750 tacaaggaccaaaacttaaacgggccatatttgcagggatgagtggaatgtttaagcctatattta 20878685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 15874384 - 15874219
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||| | |        ||||| ||||||||||||||||||||||    
T  15874384 cacgtaggcattttggtgacttgtcatgccttaaatgcgcccaggggtatttttaaaagaca-aatttttttgcggggactgatttctgaatttttattt 15874286  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctagatttaa 174  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||    
T  15874285 tacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcattgatttaa 15874219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 38484618 - 38484459
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||| |||        ||    ||||||||||||||||||||||    
T  38484618 cacgtaggcattttggtgacttgtcatgacttaaatggacccagggatatttttaaaagacagattttttttgcaaagactgatttctgaatttttattt 38484519  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||||||| ||||||||||||| |||||||| ||| |||||||||||||||||||||||    
T  38484518 tacaaggaccaaaacttaaacgggccatatttacagagacgagtgcaatatttaagccta 38484459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 23254462 - 23254377
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  23254462 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 23254377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 55893367 - 55893212
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||| |||        ||||| |   ||||||||||||||||||    
T  55893367 cacgtaggcattttggtgacttgtcatgacttaaatgagcccagggctatttttaaaagacagattttttt-gcgggga---atttctgaatttttattt 55893272  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    |||||  || ||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  55893271 tacaataaccaaaacttaaacgggccatatttgcagagacgggtgcaatatttaagccta 55893212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 42306195 - 42306281
Alignment:
Q  81 cgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||||||    
T  42306195 cggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttggagggacgagttcaatatttaagccta 42306281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 41316198 - 41316275
Alignment:
Q  89 gatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41316198 gatttctgaatttt-attttacaaggaccaaaacttaaacgaaccatatttgcagggacgagtgcaatatttaagccta 41316275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 15874524 - 15874604
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  15874524 actgatttctgaatttttattttacaaagaccaaaacttaaacggggcatatttgcagggacgagtgcaatacttaagcct 15874604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 55893467 - 55893547
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  55893467 actgatttctgaatttttatttttcaaggaccaaaacttaaacgagccatatttacagggacgagtgcaatatttaagcct 55893547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 38485175 - 38485243
Alignment:
Q  97 aatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    ||||||| ||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  38485175 aattttttttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 38485243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 20878980 - 20879032
Alignment:
Q  113 ggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  20878980 ggacgaagacttaaacgggccatatttgcagggacgagtgtaatatttaagcc 20879032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 33746868 - 33746711
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        || || | ||||||||||||||||||||    
T  33746868 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcagggattgatttctgaatttttattt 33746770  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33746769 tacatggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 33746711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 16766445 - 16766286
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||||||||||  |||||||||||||||| || |||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  16766445 cacgtaggcattttggtgacttgccatgacttaaatgggcccaagggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 16766347  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctag 168  Q
    ||||| ||| |||||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  16766346 tacaaagaccaaaacttaaatgggtcatatttgcagggacgagtgcaatatttaagcctag 16766286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 6851405 - 6851247
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||| ||||||||||||||| |||||||||||||||   ||||||||||||||||||| ||         | ||||||||||||||||||||||||||    
T  6851405 cacgtaagcattttggtgacttgtcatgacttaaatggatccaggggtatttttaaaagacag-ttttttttgtgggaactgatttctgaatttttattt 6851307  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||| ||| |||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  6851306 tacaaagaccaaaacttaaacggatcatatttgcatggacgagtgcaatatttaagccta 6851247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 16368819 - 16368977
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| | |          |||| |||||||||||||||| ||||    
T  16368819 cacgtaggcattttggtgacttgtcatgatttaaatgggcccaggggtatttttaaaagacaaatttttttgtaggga-ctgatttctgaattttcattt 16368917  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16368918 tacacggaccaaaacttaaacggatcatatttgcagggacgagtgcaatatttaagccta 16368977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 20582715 - 20582638
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaag 163  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  20582715 actgatttctgaatttttattttacaaggaccaaaacttaaacggactatatttgtagggacgagtgcaatatttaag 20582638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 16766556 - 16766635
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  16766556 actgatttctgaatttttattttacaaggaccaaaacataaacgggccatatttgcagggacgattgcaatatttaagcc 16766635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 20582827 - 20582957
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||| |||        |||||  ||||||||| |||||||||||    
T  20582827 cacgtaggcattttgatgacttgtcatgacttaaatgggcccagggatatttttaaaagacaga-tttttttgcggggtctgatttctaaatttttattt 20582925  T
Q  108 tacaaggacgaaaacttaaacggaccatattt 139  Q
    ||||||||| ||||||||||||| ||||||||    
T  20582926 tacaaggaccaaaacttaaacgggccatattt 20582957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 11242448 - 11242291
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||||| || | ||||||||||||||||  || | |||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  11242448 cacgtaggcattttggtcacctgtcatgacttaaatgggtccatgagtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 11242350  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||||||  |||||||||| |  ||||||||   ||||||||||||||||||||||||    
T  11242349 tacaaggatcaaaacttaaatgagccatatttatggggacgagtgcaatatttaagcct 11242291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 29846978 - 29847055
Alignment:
Q  89 gatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    |||||||||||||||||||||||  ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29846978 gatttctgaatttttattttacagagaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 29847055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 11246347 - 11246428
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    |||||||| ||||||||||||||||||||||  |||||||||| || |||||||||||||| ||||||||||||||||||||    
T  11246347 actgatttgtgaatttttattttacaaggactcaaacttaaacagatcatatttgcagggatgagtgcaatatttaagccta 11246428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 33746961 - 33747028
Alignment:
Q  100 ttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  33746961 tttttttttacaaggacgaaaacttaaacgggccatatttgcagggacgggtgcaatatttaagccta 33747028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 16368707 - 16368640
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||| ||||||| ||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  16368707 ttttttttttacagggacgaaaacttaaacatgccatatttgcagggacgagtgcaatatttaagcct 16368640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 29846855 - 29846788
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||| ||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  29846855 ttttttttttacagggacgaaaacttaaatgacccatatttgcagggacgagtgcaatatttaagcct 29846788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 6851549 - 6851615
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||| ||||||| | |||||||||||||||  |||||||||||| |||| |||||||||||||||||    
T  6851549 ttttttttttacaggaacgaaaacttaaacgagccatatttgcagagacg-gtgcaatatttaagcct 6851615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 29846935 - 29846974
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggc 47  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  29846935 cacgtaggcaatttggtgacttgtcatgacttaaatgggc 29846974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 409
Target Start/End: Original strand, 31139363 - 31139437
Alignment:
Q  335 tgtaatgtttttagtgctatttggcaccttgttagtcgttggattgggattttttcggtcaacccttttggtatt 409  Q
    |||||| ||||||||||||||||  ||||||||   | ||||||||||||||||||  || |||||||| |||||    
T  31139363 tgtaatatttttagtgctatttgttaccttgttcaacattggattgggattttttcaatcgacccttttcgtatt 31139437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 24825779 - 24825935
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||        ||||| ||||||||||||||||||||||    
T  24825779 cacgtaggcattttggtgacttgttatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggactgatttctgaatttttattt 24825877  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    | ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24825878 ttcaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 24825935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 32793002 - 32793159
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||        || || ||||||||||||||||||||||    
T  32793002 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcagggactgatttctgaatttttattt 32793100  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  32793101 tacaaggaccaaaacttaaacgggctatatttgcagggacgagtgcaatatttaagcct 32793159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 11324270 - 11324424
Alignment:
Q  11 gtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttac 110  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||        ||||  | |||||||||||||||||||||||    
T  11324270 gtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagattttttt-gcggagattgatttctgaatttttattttac 11324368  T
Q  111 aaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    |||||| ||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  11324369 aaggaccaaaacttaaacgagccatatttgcagggacgaatgcaatatttaagcct 11324424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 37873565 - 37873416
Alignment:
Q  16 cattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 115  Q
    |||||||||||| | |||| | |||||||||| ||||||||||||||||||| |||        || || ||||||||||||||||||||||||||||||    
T  37873565 cattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaatttttt-gcagggactgatttctgaatttttattttacaagga 37873467  T
Q  116 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    | ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37873466 ccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 37873416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 37879077 - 37879236
Alignment:
Q  16 cattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattttacaagga 115  Q
    |||||||||||| | |||| | |||||||||| ||||||||||||||||||| |||        || || | ||||||||||||||||||||||||||||    
T  37879077 cattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaatttttt-gcagggattgatttctgaatttttattttacaagga 37879175  T
Q  116 cgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctagatttaatt 176  Q
    | |||||||||||||  ||||||||||||||||||| ||||||||||||||| ||| ||||    
T  37879176 ccaaaacttaaacgggtcatatttgcagggacgagtacaatatttaagcctatattaaatt 37879236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 24825638 - 24825558
Alignment:
Q  86 actgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  24825638 actgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgagtgcaatatttaagcct 24825558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 32792860 - 32792783
Alignment:
Q  88 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  32792860 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcc 32792783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 9402627 - 9402558
Alignment:
Q  98 atttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  9402627 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaaaccta 9402558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 11324119 - 11324051
Alignment:
Q  99 tttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||| ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  11324119 ttttttttttacagggacgaaaacttaatcgggccatatttgcagggacgagtgcaatatttaaaccta 11324051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 7646 - 7491
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        ||||| | ||||||||||||||||||||    
T  7646 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagattttttt-gcggggattgatttctgaatttttattt 7548  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagc 164  Q
    || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  7547 tagaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 7491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 7765 - 7849
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagc 164  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  7765 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacgagtgcaatatttaagc 7849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 31155561 - 31155719
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| | |        ||||| ||||||||||||||||||||||    
T  31155561 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaagggtatttttaaaagacatattttttt-gcggggactgatttctgaatttttattt 31155659  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  31155660 tacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccta 31155719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 39761533 - 39761689
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||        || || ||||||||||||||||||||||    
T  39761533 cacgtaagcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagattttttt-gcagggactgatttctgaatttttattt 39761631  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    ||||||||| ||||||||||||  |||||||||||||||| |||||||||||||||||    
T  39761632 tacaaggaccaaaacttaaacgtgccatatttgcagggacaagtgcaatatttaagcc 39761689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 39760509 - 39760422
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39760509 gcggggactaatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 39760422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 31156049 - 31155893
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    |||||| ||||||||||||||| |||| |||||||||||| ||||||||||||||||||| | |        ||| | ||||||||||||||||||||||    
T  31156049 cacgtaagcattttggtgacttgtcataacttaaatgggcccaggggtatttttaaaagacatattttttt-gcgaggactgatttctgaatttttattt 31155951  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    ||||||||| ||||||||||||   ||||||||||||||||||  |||||||||||||    
T  31155950 tacaaggaccaaaacttaaacgtgtcatatttgcagggacgagatcaatatttaagcc 31155893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 31156183 - 31156270
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  31156183 gcggggactgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttgtagggacgaatgcaatatttaagccta 31156270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 31155430 - 31155369
Alignment:
Q  105 ttttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    |||||||||||| |||| |||||||| ||||||||||| |||||||| ||||||||||||||    
T  31155430 ttttacaaggacaaaaaattaaacgggccatatttgcatggacgagtacaatatttaagcct 31155369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 11274 - 11432
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||| |||||| |||| || ||||||||| ||||||||||||||||||| |||        ||| | ||||||||||||||||||||||    
T  11274 cacgtaggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagattttttt-gcgaggactgatttctgaatttttattt 11372  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 167  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  11373 tacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagccta 11432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 11110 - 10953
Alignment:
Q  8 cacgtaggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagagannnnnnnngcgggaactgatttctgaatttttattt 107  Q
    ||||||||||||||| |||||| |||| || ||||||||| ||||||||||||||||||| |||        ||| | ||||||||||||||||||||||    
T  11110 cacgtaggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagattttttt-gcgaggactgatttctgaatttttattt 11012  T
Q  108 tacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||    
T  11011 tacaaggaccaaaatttaaacgggccatatttgcagggacgagtgcaatatttaagcct 10953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 7183 - 7328
Alignment:
Q  20 ttggtgacttatcatgacttaaatgggcacaggggtatttttaaaa-gagagannnnnnnngcgggaactgatttctgaatttttattttacaaggacga 118  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| || |||        ||||| ||||||||||||||||||||||||||||||| |    
T  7183 ttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaaagacagattttttt-gcggggactgatttctgaatttttattttacaaggacca 7281  T
Q  119 aaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 165  Q
    |||||||||||| |||||||||||||||||| | |||||||||||||    
T  7282 aaacttaaacgggccatatttgcagggacgaatccaatatttaagcc 7328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 7095 - 7017
Alignment:
Q  88 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 166  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7095 tgatttctgaatttttattttataaggaccaaaacttaaacggaccatatttgcaggaacgagtgcaatatttaagcct 7017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 33206 - 33288
Alignment:
Q  80 gcgggaactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaa 162  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  33206 gcggggactgatttctgaatttttattttacaaggaccaaaacataaacggaccatatttgcagggacgagtgcaatatttaa 33288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 33074 - 32959
Alignment:
Q  12 taggcattttggtgacttatcatgacttaaatgggcacaggggtatttttaaaagagaga-nnnnnnnngcgggaactgatttctgaatttttattttac 110  Q
    |||||||||||||||||| |||||||||| |||||  ||||||||||||||||||| |||         ||||| |||||||||||||||||||||||||    
T  33074 taggcattttggtgacttgtcatgacttatatgggtccaggggtatttttaaaagacagatttttttttgcggggactgatttctgaatttttattttac 32975  T
Q  111 aaggacgaaaacttaa 126  Q
    |||||| |||||||||    
T  32974 aaggaccaaaacttaa 32959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 1821 - 1745
Alignment:
Q  88 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagc 164  Q
    |||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  1821 tgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 1745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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