View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_39 (Length: 421)
Name: NF11928_low_39
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 53499942 - 53499746
Alignment:
| Q |
16 |
gtctccccacgcaatttcattcattcttttggaacgttacatgcatgtaatagtaatagtcaaaattgttgcaatatgagagaataatgtgaaaattgac |
115 |
Q |
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| T |
53499942 |
gtctccccacgcaatttcattctttcttttggaacgttacatgcatgtaatagtaatagtcaaaattgttgcaatatgagagaataatgtgaaaattgac |
53499843 |
T |
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| Q |
116 |
atgagaattatgggataactgttataaataccattcatatatatttaatttagttacaaaggtgatctagctacgactacatatgatattttacatgg |
213 |
Q |
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| T |
53499842 |
atgagaattatgggataactgttatacataccattcatatatatat-atttagttacaaaggtgatctagctacgactacatatgatattttacatgg |
53499746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 287 - 412
Target Start/End: Complemental strand, 53499670 - 53499545
Alignment:
| Q |
287 |
gatcgtgaggcaatgagttatgagagtcctatagtatatgagactaagagtgagtgcattcaactggaaggccttgtggaaatctcttcttatctgagca |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499670 |
gatcgtgaggcaatgagttatgagagtcctatagtatatgagactaagagtgagtgcattcaactggaaggccttgtggaaatctcttcttatctgagca |
53499571 |
T |
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| Q |
387 |
gtaattataaatcatatagttcttct |
412 |
Q |
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| T |
53499570 |
gtaattataaatcatatagttcttct |
53499545 |
T |
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