View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_40 (Length: 421)

Name: NF11928_low_40
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_40
NF11928_low_40
[»] chr6 (5 HSPs)
chr6 (3-353)||(22508861-22509204)
chr6 (199-289)||(10117130-10117226)
chr6 (242-289)||(8546246-8546293)
chr6 (371-404)||(22509205-22509238)
chr6 (230-289)||(32296362-32296421)
[»] chr7 (3 HSPs)
chr7 (200-288)||(33049084-33049172)
chr7 (227-288)||(31742873-31742934)
chr7 (196-289)||(47363815-47363910)
[»] chr8 (2 HSPs)
chr8 (230-289)||(14867365-14867424)
chr8 (195-289)||(23490081-23490176)
[»] chr4 (3 HSPs)
chr4 (197-289)||(28146947-28147040)
chr4 (201-289)||(11440557-11440646)
chr4 (200-289)||(55606358-55606448)
[»] chr5 (5 HSPs)
chr5 (200-289)||(39426201-39426292)
chr5 (199-289)||(20141661-20141751)
chr5 (197-281)||(16341534-16341621)
chr5 (201-269)||(14355012-14355080)
chr5 (230-270)||(36491493-36491533)
[»] chr1 (3 HSPs)
chr1 (195-289)||(32617681-32617776)
chr1 (195-287)||(9457579-9457673)
chr1 (195-287)||(9461676-9461770)
[»] chr2 (3 HSPs)
chr2 (199-289)||(37794763-37794854)
chr2 (199-284)||(19263738-19263824)
chr2 (230-286)||(17989102-17989158)
[»] chr3 (3 HSPs)
chr3 (230-288)||(11783520-11783578)
chr3 (204-289)||(19596551-19596636)
chr3 (226-269)||(46475575-46475618)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 3 - 353
Target Start/End: Original strand, 22508861 - 22509204
Alignment:
Q  3 gaactcaatttcacatagcaaccatcatcatcacaatcatagcccaagacaaaccgtaataatccacaatttgaaatgcactactttcgttgtacgacaa 102  Q
    |||||||||||||||||||||||||||| ||||  ||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  22508861 gaactcaatttcacatagcaaccatcattatcatcatcattgtccaagacaaaccctaataatccacaatttgaaatgcactactttcgt-gtactacaa 22508959  T
Q  103 aacaaaatatgtaataaccaaggttctaaaatacagctacgagaaaaatgccccaacaaaaaggaatagttagtgggcgtcagtgttttc--ccatgccg 200  Q
    |||||||||||||||||||||||||||||          ||||||||| ||||| |||||||| |||||||||||| ||||| |||||||  || |||||    
T  22508960 aacaaaatatgtaataaccaaggttctaa----------cgagaaaaaggccccgacaaaaagaaatagttagtggccgtcactgttttctcccgtgccg 22509049  T
Q  201 ttcatgacaatggacagagaatccagatattttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacatctttctctagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22509050 ttcatgacaatggacagagaatccagatattttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacatctttctctggt 22509149  T
Q  301 taagaattt--aatctatctctaatttttgtttatatacatattatttaagagtt 353  Q
    |||||||||  ||||||||||||||||  ||| ||||||||||||| ||||||||    
T  22509150 taagaatttcaaatctatctctaatttacgttaatatacatattatgtaagagtt 22509204  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 10117130 - 10117226
Alignment:
Q  199 cgttcatgacaatggacagagaatccagata-ttttccaattaagatgga-----tgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    ||||||||||||| |||| ||||||| |||| |||||||||| |||| ||     ||||||||| ||||||||||||| ||||| ||||||||||||    
T  10117130 cgttcatgacaatagacacagaatccggatatttttccaattgagatagatgaattgaaaatcatatttttagtacatatttgatcataaattacat 10117226  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 8546246 - 8546293
Alignment:
Q  242 gatggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||||    
T  8546246 gatggatgaaaatcacatttctagtacaaatttgaacataaattacat 8546293  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 404
Target Start/End: Original strand, 22509205 - 22509238
Alignment:
Q  371 atgcacatggcggatacgacaatcagtatgcaac 404  Q
    ||||||||||||||||||||||||||||||||||    
T  22509205 atgcacatggcggatacgacaatcagtatgcaac 22509238  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 32296362 - 32296421
Alignment:
Q  230 ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    |||| ||||| |||| ||||||||||| ||||||||||||| ||||| ||||| ||||||    
T  32296362 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacat 32296421  T

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Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 33049084 - 33049172
Alignment:
Q  200 gttcatgacaatggacagagaatccagatattttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattaca 288  Q
    |||||||||||| ||||||||||||   |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  33049084 gttcatgacaatagacagagaatcccattatttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattaca 33049172  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 31742873 - 31742934
Alignment:
Q  227 atattttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattaca 288  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  31742873 atatttttcaattgagatggatgaaaatcacatttttaatacatatttgaacatatattaca 31742934  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 47363910 - 47363815
Alignment:
Q  196 tgccgttcatgacaatggacagagaatccagata-ttttccaattaaga-tggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    |||||||||||||||| |||| ||||||| |||| |||| ||||| ||| | |||||||| || ||||||||||||| ||||| |||| |||||||    
T  47363910 tgccgttcatgacaatagacatagaatccggatattttttcaattgagattagatgaaaagcatatttttagtacatatttgatcatagattacat 47363815  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 14867424 - 14867365
Alignment:
Q  230 ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14867424 tttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattacat 14867365  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 23490176 - 23490081
Alignment:
Q  195 atgccgttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    ||||||||||||||||| |||| || |||| ||||||||  ||||| |||| ||||||||||| |||||| |||||| ||||| ||||||||||||    
T  23490176 atgccgttcatgacaatagacatagcatccggatattttttcaattgagatagatgaaaatcatatttttcgtacatatttgatcataaattacat 23490081  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 28146947 - 28147040
Alignment:
Q  197 gccgttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    ||||||||||||||| |||| ||||||  ||||||||  ||||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||||    
T  28146947 gccgttcatgacaatagacatagaatctggatattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacat 28147040  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 11440557 - 11440646
Alignment:
Q  201 ttcatgacaatggacagagaatccagata-ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    ||||||||||| |||| | | ||| |||| |||| |||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||    
T  11440557 ttcatgacaatagacacatagtccggataatttttcaattaagatagatgaaaatcatatttttagtacatatttgatcataaattacat 11440646  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 55606448 - 55606358
Alignment:
Q  200 gttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    |||||||||||| ||||  ||||||| |||||||  ||||| | || ||||||||| | ||||||||||||| ||||| ||||||||||||    
T  55606448 gttcatgacaatagacatggaatccaaatattttttcaattgatatagatgaaaattatatttttagtacatatttgatcataaattacat 55606358  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 39426292 - 39426201
Alignment:
Q  200 gttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacat-ttttagtacatgtttgaacataaattacat 289  Q
    |||||||||||| |||| |||||||| |||||||  |||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||    
T  39426292 gttcatgacaatagacatagaatccaaatattttttcaattaagatagatgaaaatcatatattttagtacatatttgatcataaattacat 39426201  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 20141751 - 20141661
Alignment:
Q  199 cgttcatgacaatggacagagaatccagatattttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    |||||||||||||  ||| ||| ||| | |||||| ||||| |||||||||||||||| || |||| ||||  ||||||||||||||||||    
T  20141751 cgttcatgacaatatacaaagattcctgttatttttcaatttagatggatgaaaatcatatctttattacagatttgaacataaattacat 20141661  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 16341621 - 16341534
Alignment:
Q  197 gccgttcatgacaatggacagagaatccagata---ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacata 281  Q
    ||||||||||||||| |||| ||||||| ||||   |||| ||||| |||| |||||||| || ||||||||||||| ||||| ||||    
T  16341621 gccgttcatgacaatagacatagaatccggatattttttttcaattgagatagatgaaaaacatatttttagtacatatttgatcata 16341534  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 14355080 - 14355012
Alignment:
Q  201 ttcatgacaatggacagagaatccagatattttccaattaagatggatgaaaatcacatttttagtaca 269  Q
    ||||||||||| |||| | |||| |  |||||| ||||| |||||||||||||||||||||||| ||||    
T  14355080 ttcatgacaatagacataaaatcaatttatttttcaattgagatggatgaaaatcacatttttaataca 14355012  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 36491493 - 36491533
Alignment:
Q  230 ttttccaattaagatggatgaaaatcacatttttagtacat 270  Q
    |||| |||||||||| ||||||||||| |||||||||||||    
T  36491493 tttttcaattaagatagatgaaaatcatatttttagtacat 36491533  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 32617776 - 32617681
Alignment:
Q  195 atgccgttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    |||| |||||||||||| |||| ||||||| | ||||||  ||||| |||| ||||||||||| ||||||||||||| ||||| ||||||||||||    
T  32617776 atgcagttcatgacaatagacatagaatccgggtattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacat 32617681  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 9457579 - 9457673
Alignment:
Q  195 atgccgttcatgacaatggacagagaatccagata--ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattac 287  Q
    ||||||||||||||||| |||| ||||||||||||  |||| ||||| |||| ||| ||||||| ||||||  ||||| | ||| ||||||||||    
T  9457579 atgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaaaatcatatttttgatacatatctgatcataaattac 9457673  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 9461676 - 9461770
Alignment:
Q  195 atgccgttcatgacaatggacagagaatccagata--ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattac 287  Q
    ||||||||||||||||| |||| ||||||||||||  |||| ||||| |||| ||| ||||||| ||||||  ||||| | ||| ||||||||||    
T  9461676 atgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaaaatcatatttttgatacatatctgatcataaattac 9461770  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 37794854 - 37794763
Alignment:
Q  199 cgttcatgacaatggacagagaatccagatattttc-caattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    ||||||||||||  |||| ||||||  ||||||||  ||||| |||| || |||||||| ||||||||||||| ||||| ||||||||||||    
T  37794854 cgttcatgacaaaagacatagaatctggatattttttcaattgagatagaagaaaatcatatttttagtacatatttgatcataaattacat 37794763  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 19263738 - 19263824
Alignment:
Q  199 cgttcatgacaatggacagagaatccagatatt-ttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaat 284  Q
    ||||||||||||| || | |||||| ||||||| || ||||| |||| ||||||||||| ||||||| ||||| ||||| |||||||    
T  19263738 cgttcatgacaatagatatagaatcaagatattgtttcaattgagatagatgaaaatcatatttttaatacatatttgatcataaat 19263824  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 17989158 - 17989102
Alignment:
Q  230 ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaatta 286  Q
    |||| ||||| |||| ||||||||||| ||||||||||||| ||||| |||||||||    
T  17989158 tttttcaattgagatcgatgaaaatcatatttttagtacatatttgatcataaatta 17989102  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 11783578 - 11783520
Alignment:
Q  230 ttttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattaca 288  Q
    |||| ||||| |||| ||||||||||| ||||||||||||| ||||| |||||||||||    
T  11783578 tttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattaca 11783520  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 19596636 - 19596551
Alignment:
Q  204 atgacaatggacagagaatccagatattttccaattaagatggatgaaaatcacatttttagtacatgtttgaacataaattacat 289  Q
    ||||||||  || |||||||| | |||||| ||||| || ||||| ||||||| ||||||||||||  ||||||||||| ||||||    
T  19596636 atgacaataaactgagaatccggttatttttcaattgaggtggataaaaatcatatttttagtacaaatttgaacataagttacat 19596551  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 46475575 - 46475618
Alignment:
Q  226 gatattttccaattaagatggatgaaaatcacatttttagtaca 269  Q
    |||||||| ||||| | |||||||||||||||||||||||||||    
T  46475575 gatatttttcaattgatatggatgaaaatcacatttttagtaca 46475618  T

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