View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_42 (Length: 404)

Name: NF11928_low_42
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_42
NF11928_low_42
[»] chr5 (11 HSPs)
chr5 (8-304)||(41343630-41343922)
chr5 (300-386)||(41343481-41343567)
chr5 (322-386)||(34335337-34335401)
chr5 (324-388)||(43129536-43129600)
chr5 (322-388)||(37873679-37873745)
chr5 (322-386)||(13166953-13167017)
chr5 (322-386)||(22188698-22188762)
chr5 (322-386)||(42921697-42921761)
chr5 (327-386)||(32269840-32269899)
chr5 (322-380)||(23423920-23423978)
chr5 (322-388)||(25663073-25663139)
[»] scaffold0148 (1 HSPs)
scaffold0148 (322-388)||(33250-33316)
[»] chr4 (12 HSPs)
chr4 (322-386)||(50483239-50483303)
chr4 (322-386)||(600735-600799)
chr4 (301-388)||(56462147-56462233)
chr4 (322-388)||(34107737-34107803)
chr4 (300-387)||(747811-747897)
chr4 (302-388)||(46391356-46391440)
chr4 (322-386)||(55933505-55933567)
chr4 (300-387)||(712635-712721)
chr4 (323-386)||(11562899-11562962)
chr4 (322-388)||(7536612-7536678)
chr4 (326-386)||(12918415-12918475)
chr4 (322-386)||(53619586-53619650)
[»] chr3 (11 HSPs)
chr3 (321-388)||(54508425-54508492)
chr3 (300-388)||(25325008-25325095)
chr3 (322-386)||(51234616-51234680)
chr3 (322-386)||(53785709-53785773)
chr3 (322-386)||(7900858-7900922)
chr3 (322-386)||(52741555-52741619)
chr3 (324-387)||(7502054-7502117)
chr3 (300-386)||(39583272-39583357)
chr3 (322-386)||(44198767-44198831)
chr3 (322-388)||(37133040-37133106)
chr3 (322-386)||(32546795-32546859)
[»] chr7 (18 HSPs)
chr7 (325-387)||(6635005-6635067)
chr7 (322-388)||(22197986-22198052)
chr7 (322-388)||(22239769-22239835)
chr7 (322-386)||(19277293-19277357)
chr7 (322-385)||(43856874-43856937)
chr7 (322-384)||(5972261-5972323)
chr7 (322-386)||(982949-983013)
chr7 (322-386)||(21326881-21326945)
chr7 (300-388)||(30216099-30216186)
chr7 (322-388)||(40726521-40726587)
chr7 (326-386)||(47679129-47679189)
chr7 (322-386)||(48539181-48539245)
chr7 (322-385)||(27521471-27521534)
chr7 (321-388)||(34772781-34772847)
chr7 (322-388)||(5825273-5825339)
chr7 (322-388)||(28517328-28517394)
chr7 (322-388)||(42295225-42295291)
chr7 (322-386)||(4501259-4501322)
[»] chr2 (11 HSPs)
chr2 (300-386)||(18744997-18745082)
chr2 (322-386)||(4413109-4413173)
chr2 (322-386)||(28225000-28225064)
chr2 (322-387)||(13147142-13147207)
chr2 (322-386)||(20142768-20142832)
chr2 (322-386)||(34814862-34814925)
chr2 (322-386)||(41867951-41868015)
chr2 (303-356)||(7760918-7760970)
chr2 (326-386)||(9685458-9685518)
chr2 (322-386)||(17344638-17344702)
chr2 (322-386)||(29808075-29808139)
[»] chr1 (13 HSPs)
chr1 (300-389)||(2898681-2898769)
chr1 (300-386)||(4862032-4862117)
chr1 (322-386)||(29169836-29169900)
chr1 (322-386)||(34644566-34644630)
chr1 (326-386)||(45659691-45659751)
chr1 (322-388)||(28041168-28041234)
chr1 (322-387)||(24177553-24177618)
chr1 (322-386)||(31737366-31737430)
chr1 (322-388)||(21473003-21473069)
chr1 (321-386)||(2764478-2764543)
chr1 (324-385)||(22346897-22346958)
chr1 (321-385)||(16500033-16500097)
chr1 (322-386)||(50314667-50314731)
[»] chr8 (6 HSPs)
chr8 (300-386)||(24125007-24125092)
chr8 (301-386)||(8115792-8115875)
chr8 (319-388)||(8540418-8540487)
chr8 (322-386)||(3187969-3188033)
chr8 (300-386)||(38815273-38815358)
chr8 (322-386)||(8619814-8619878)
[»] chr6 (8 HSPs)
chr6 (325-385)||(959583-959643)
chr6 (322-386)||(33220754-33220818)
chr6 (301-386)||(4165965-4166049)
chr6 (322-386)||(4206639-4206703)
chr6 (300-387)||(28625909-28625995)
chr6 (322-387)||(13398224-13398289)
chr6 (322-386)||(17249348-17249412)
chr6 (322-386)||(34304496-34304560)
[»] scaffold0009 (1 HSPs)
scaffold0009 (323-386)||(103107-103170)
[»] scaffold0490 (1 HSPs)
scaffold0490 (322-383)||(6334-6395)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 41343922 - 41343630
Alignment:
Q  8 aacctgtgattttggggttaagaatgctagaacaacaacaaaaagaagaacaaggataggtgttgtgtctgtgagtgatgtaaccacagtacttgatccg 107  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41343922 aacctgggattttggggttaagaatgcaagaacaacaacaaaaagaagaacaaggataggtgttgtgtctgtgagtgatgtaaccacagtacttgatccg 41343823  T
Q  108 gctcctgtggaaatcacatggcaaattgtggttggaactataggtaatatcttgttttctttaatgtttatctatttagaaagagaacgattagtctagt 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  41343822 gctcctgtcgaaatcacatggcaaattgtggttggaactataggtaatatcttgtttcctttaatgtttatctatttagaaagagaatgattagtctagt 41343723  T
Q  208 aaatttagctcacatagtnnnnnnnttgtatagatatttgatatgtcgagatgtgggttgtaactcgtaattcctcacttctaagtacatagtatgc 304  Q
    |||||||||||||    |       ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  41343722 aaatttagctcac----taaaaaaattgtatagatatttgatatgtcgagacacgggttgtaactcgtaattcctcacttctaagtacatagtatgc 41343630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 300 - 386
Target Start/End: Complemental strand, 41343567 - 41343481
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||| |||| ||||||||| ||||||||||||||    
T  41343567 tatgcatgatcctttgaactattatgtagaaggccaacaacctctggtgctagaaaaccgaatatgtcgaaaacaaatggtataaaa 41343481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 34335337 - 34335401
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||| |||||| ||| ||||| |||||| |||| ||| ||||||||||||||    
T  34335337 tatgtagaaggtcaacagcctctggtgtcagaaagtcgaaagtgtcaaaaacaaatggtataaaa 34335401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 43129536 - 43129600
Alignment:
Q  324 tgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||||||||||| ||| |||| |||||| ||| |||||||||| ||||||||||||| ||||||    
T  43129536 tgtagaaggtcaaaaacatctggtgttaggaaaccgaaaatgtcaaaagcaaatggtagaaaaac 43129600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 37873745 - 37873679
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    |||||||||||||||||||||||| || ||| ||  | ||| |||| ||||||||||||||||||||    
T  37873745 tatgtagaaggtcaacaacctctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaac 37873679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 13167017 - 13166953
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||  |||||||| ||| ||  ||||| |||| ||||||||||||||||||    
T  13167017 tatgtagaaggtcaacagtctctgatgctaggaagccgaaagtgtcaaaagcaaatggtataaaa 13166953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 22188762 - 22188698
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||| |||||| || || |||||||||| |||| ||| ||||| ||||||||    
T  22188762 tatgtagaaggtcaacagcctctggtgctaaaaaatcgaaagtgtcaaaaacaaatagtataaaa 22188698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 42921697 - 42921761
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||| |||||||||||| || ||| ||| ||||| ||||  |||||||||||||||||    
T  42921697 tatgtagaaggccaacaacctctggtgctaggaaaccgaaagtgtcataagcaaatggtataaaa 42921761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 386
Target Start/End: Complemental strand, 32269899 - 32269840
Alignment:
Q  327 agaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||||  || ||| ||||||||| | || ||||||||||||||||||    
T  32269899 agaaggtcaacaacctctagtgctaggaaatcgaaagtatcaaaagcaaatggtataaaa 32269840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 23423978 - 23423920
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggt 380  Q
    ||||||||||||||||||| | ||||||||| || | |||| |||| ||||||||||||    
T  23423978 tatgtagaaggtcaacaacatttgatgttaggaagttgaaagtgtcaaaagcaaatggt 23423920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 25663139 - 25663073
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    |||||||||| |||||||| ||||||| ||| ||   |||| |||| ||||||||||||||||||||    
T  25663139 tatgtagaagatcaacaacttctgatgctaggaagctgaaagtgtcaaaagcaaatggtataaaaac 25663073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 33250 - 33316
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||| |||| |||||||||||||||    
T  33250 tatgtagaaggtcaacaacctctggtgttaggaaaccgaaaatgtcaaaagtaaatggtataaaaac 33316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 50483303 - 50483239
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||||||||| || ||| ||| ||||| |||||||||||||||||||||||    
T  50483303 tatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcgaaagcaaatggtataaaa 50483239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 600799 - 600735
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||||||||| |||||| ||| ||||| || | ||||||||||||||||||    
T  600799 tatgtagaaggtcaacaacctctggtgttaggaaaccgaaagtgacaaaagcaaatggtataaaa 600735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 388
Target Start/End: Complemental strand, 56462233 - 56462147
Alignment:
Q  301 atgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    |||||||||||||| |||| | ||||||||||||||||||||||| || ||| ||| | ||| |||| ||| ||||||||||||||||    
T  56462233 atgcatgatcctttgaactct-atgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtctaaaacaaatggtataaaaac 56462147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 34107803 - 34107737
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||||||||||||||| |||||| || ||| ||||||||| |||| ||| ||||||||||||||||    
T  34107803 tatgtagaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaaacaaatggtataaaaac 34107737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 747897 - 747811
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaa 387  Q
    ||||||||| | |||||||| | ||||||||||||||||||||||||| |||  ||| |  |||| || |||||||||||||||||||    
T  747897 tatgcatgaccttttaaactct-atgtagaaggtcaacaacctctgatattaagaaaccagaaatatcaaaagcaaatggtataaaaa 747811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 46391440 - 46391356
Alignment:
Q  302 tgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||  || ||| |||||||||||||   |||| ||||||||||||||    
T  46391440 tgcatgatcttttgaact-ttatgtagaaggtcaacaacctctactgataggaaatcgaaaatgttacaagc-aatggtataaaaac 46391356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 55933567 - 55933505
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||||||  |||| ||| || |||||| |||| ||||||||||||||||||    
T  55933567 tatgtagaaggtcaacaacct--gatgctaggaagtcgaaagtgtcaaaagcaaatggtataaaa 55933505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 712721 - 712635
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaa 387  Q
    ||||||||| | |||||||| | |||||||||| |||||||||||||| |||  ||| |  |||| || |||||||||||||||||||    
T  712721 tatgcatgaccttttaaactct-atgtagaaggacaacaacctctgatattaagaaaccagaaatatcaaaagcaaatggtataaaaa 712635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 11562899 - 11562962
Alignment:
Q  323 atgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||| |||||||||||   |||||||||| |||||||||| |||| ||||| |||||||    
T  11562899 atgtagaagatcaacaacctcgagtgttagaaaaccgaaaatgtctaaagtaaatgatataaaa 11562962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 7536678 - 7536612
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    |||||||||||||||||||||||| || ||| |||  |||| |||| ||| ||||| ||||||||||    
T  7536678 tatgtagaaggtcaacaacctctggtgctaggaaactgaaattgtcaaaaacaaattgtataaaaac 7536612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 12918475 - 12918415
Alignment:
Q  326 tagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||| |||||||| ||| || |||||| |||| |||| |||| ||||||||    
T  12918475 tagaaggtcaacaatctctgatgctaggaagtcgaaagtgtcaaaagtaaatagtataaaa 12918415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 53619586 - 53619650
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||  ||||||||| ||| || || ||| |||| ||| ||||||||||||||    
T  53619586 tatgtagaaggtcaactgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaa 53619650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 388
Target Start/End: Complemental strand, 54508492 - 54508425
Alignment:
Q  321 ttatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||| ||||||||||||||||||| || ||||||||| |||||||| |||||||||| |||||||||    
T  54508492 ttatgcagaaggtcaacaacctctggtgctagaaaatcaaaaatgtcaaaagcaaatgatataaaaac 54508425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 388
Target Start/End: Original strand, 25325008 - 25325095
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||||||||| ||| |||| | ||||||||||||||||| || || || ||| ||||||||| ||| |||||||||||||||||||||    
T  25325008 tatgcatgatcatttgaactct-atgtagaaggtcaacaatctatggtgctaggaaatcgaaagtgttgaaagcaaatggtataaaaac 25325095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 51234616 - 51234680
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||||||||||||| |||||| |||||| |||| |||  |||||||||||||    
T  51234616 tatgtagaaggtcaacaacctctgatgctagaaagtcgaaagtgtcaaaaataaatggtataaaa 51234680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 53785709 - 53785773
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||||||||| || ||| ||| ||||| |||| ||||||||||||||||||    
T  53785709 tatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaa 53785773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 7900858 - 7900922
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||||||||||||| ||| ||  ||||| |||| ||| ||||||||||||||    
T  7900858 tatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaa 7900922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 52741619 - 52741555
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||||||||| || ||| ||| | ||| |||| ||||||||||||||||||    
T  52741619 tatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaa 52741555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 7502117 - 7502054
Alignment:
Q  324 tgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaa 387  Q
    |||||||||||||||||||||| || ||| ||| | |||||||| |||| ||||||||||||||    
T  7502117 tgtagaaggtcaacaacctctggtgctaggaaaccaaaaatgtcaaaagaaaatggtataaaaa 7502054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 386
Target Start/End: Complemental strand, 39583357 - 39583272
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||| ||||| |||| | ||| |||||||||||||||| ||||| ||| ||| ||||| |||||||| |||||| |||||||    
T  39583357 tatgcatgaccctttgaactct-atgcagaaggtcaacaacctatgatgctaggaaaccgaaagtgtcgaaaacaaatgatataaaa 39583272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 44198767 - 44198831
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||| |||| | |||||  ||| ||||| |||| ||||||||||||||||||    
T  44198767 tatgtagaaggtcaacagcctcgggtgttaagaaaccgaaagtgtcaaaagcaaatggtataaaa 44198831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 37133106 - 37133040
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    |||||||||||||||||||||||| || ||  ||| ||||| |||  ||| ||||||||||||||||    
T  37133106 tatgtagaaggtcaacaacctctggtgctaagaaaccgaaagtgtaaaaaacaaatggtataaaaac 37133040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 32546795 - 32546859
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||| ||| || || ||| |||  |||| |||| ||||||||||||||||||    
T  32546795 tatgtagaaggtcaacagcctttggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaa 32546859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 6635067 - 6635005
Alignment:
Q  325 gtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaa 387  Q
    |||||||||||||||||||||||| || |||||||||| |||| |||||||||| ||||||||    
T  6635067 gtagaaggtcaacaacctctgatgctaaaaaatcgaaactgtcaaaagcaaatgatataaaaa 6635005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 22197986 - 22198052
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||||||||||||||||||||||||| ||| ||| ||||| || | ||||||||||||||||||||    
T  22197986 tatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaac 22198052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 22239835 - 22239769
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||||||||||||||||||||||||| ||| ||| ||||| || | ||||||||||||||||||||    
T  22239835 tatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaac 22239769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 19277293 - 19277357
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||||||||| || ||| ||| ||||| |||| ||||||||||||||||||    
T  19277293 tatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaa 19277357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 43856874 - 43856937
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaa 385  Q
    |||||||||||||||||||||||| |||||| ||| | |||||||| ||||||||| |||||||    
T  43856874 tatgtagaaggtcaacaacctctggtgttaggaaaccaaaaatgtcaaaagcaaattgtataaa 43856937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 5972323 - 5972261
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataa 384  Q
    ||||||||||||||||||||||||||  |||||||  ||||||||| ||| ||||||||||||    
T  5972323 tatgtagaaggtcaacaacctctgatactagaaaaatgaaaatgtcaaaaacaaatggtataa 5972261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 982949 - 983013
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||| |||||||||||| || ||||||| ||||| | || ||||||||||||||||||    
T  982949 tatgtagaaggccaacaacctctggtgctagaaaaccgaaagtatcaaaagcaaatggtataaaa 983013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 21326945 - 21326881
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||| |||||||||| |||||| || ||| ||||||||| |||| ||||||||||||||||||    
T  21326945 tatgtaaaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaagcaaatggtataaaa 21326881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 388
Target Start/End: Complemental strand, 30216186 - 30216099
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||||||| | ||| |||| |||||| |||| ||||||| |||||||| ||| ||| ||||| |||| ||||||||||||||||||||    
T  30216186 tatgcatgaccatttgaact-ttatgtggaagatcaacaaactctgatgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaac 30216099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 40726587 - 40726521
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||||||||||||||||||||||||| ||  ||  ||||| |||| ||| ||||||||||||||||    
T  40726587 tatgtagaaggtcaacaacctctgatgctatgaagccgaaagtgtcaaaaacaaatggtataaaaac 40726521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 47679129 - 47679189
Alignment:
Q  326 tagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||| ||||| ||| ||| |||||||||| || |||||| ||||||||    
T  47679129 tagaaggtcaacaacctgtgatgctaggaaaccgaaaatgtcaaacgcaaatagtataaaa 47679189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 48539181 - 48539245
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||| | |||||| |||||| || ||||||| ||||| |||| ||||||||||||||||||    
T  48539181 tatgtagacgatcaacagcctctggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaa 48539245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 27521471 - 27521534
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaa 385  Q
    ||||||||||||||||||||||||||| ||| ||| | ||| |||| |||| |||| |||||||    
T  27521471 tatgtagaaggtcaacaacctctgatgctaggaaaccaaaagtgtcaaaagtaaattgtataaa 27521534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 34772781 - 34772847
Alignment:
Q  321 ttatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    |||||||||||||||||||||||| || | || |||| |||| | || ||||||||||||||||||||    
T  34772781 ttatgtagaaggtcaacaacctctaatctaag-aaattgaaagtttcaaaagcaaatggtataaaaac 34772847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 5825273 - 5825339
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    |||||||||||||||||||||||| || ||| |   ||||| |||| |||| |||||||||||||||    
T  5825273 tatgtagaaggtcaacaacctctggtgctaggatgccgaaagtgtcaaaagtaaatggtataaaaac 5825339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 28517394 - 28517328
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||||||||||||||   |||||||| ||| || || ||| |||| ||||||||||||||||||||    
T  28517394 tatgtagaaggtcaactgtctctgatgctaggaagtcaaaagtgtcaaaagcaaatggtataaaaac 28517328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 42295291 - 42295225
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    |||||||||||||||||||| ||| |||||| ||| ||||| | |  ||| ||||||||||||||||    
T  42295291 tatgtagaaggtcaacaacccctggtgttaggaaaccgaaagtataaaaaacaaatggtataaaaac 42295225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 4501259 - 4501322
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||||||||| || ||||||| | ||| |||| |||||||||  |||||||    
T  4501259 tatgtagaaggtcaacaacctctggtgctagaaaa-ccaaagtgtcaaaagcaaattatataaaa 4501322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 386
Target Start/End: Complemental strand, 18745082 - 18744997
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||| ||| |||| | |||||||||| ||||| ||| || || |||||||||||||||||| ||||||||||||||||||    
T  18745082 tatgcatgatcttttgaactct-atgtagaaggccaacagcctatggtgctagaaaatcgaaaatgtcaaaagcaaatggtataaaa 18744997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 4413173 - 4413109
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||| ||||| || ||| ||| ||||| |||| ||||||||||||||||||    
T  4413173 tatgtagaaggtcaacaatctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaa 4413109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 28225000 - 28225064
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||||||||||| | ||| ||  ||||| |||| ||||||||||||||||||    
T  28225000 tatgtagaaggtcaacaacctctgaagctaggaagccgaaagtgtcaaaagcaaatggtataaaa 28225064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 13147207 - 13147142
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaa 387  Q
    |||| ||||||||||||| ||||| |||||||||| | ||| |||| ||| |||||||||||||||    
T  13147207 tatgaagaaggtcaacaatctctggtgttagaaaaccaaaagtgtcaaaatcaaatggtataaaaa 13147142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 20142832 - 20142768
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||| |||||||||||||| ||||| ||||||| | ||| |||| |||| |||||||||||||    
T  20142832 tatgtataaggtcaacaacctttgatgctagaaaaccaaaagtgtcaaaagaaaatggtataaaa 20142768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 34814925 - 34814862
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||  ||||| |||||| ||  ||||| |||||||||||||||||||||||    
T  34814925 tatgtagaaggtcaacagtctctggtgttaggaac-cgaaagtgtcgaaagcaaatggtataaaa 34814862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 41868015 - 41867951
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||| |||||| || ||| ||  ||||| |||| ||||||||||||||||||    
T  41868015 tatgtagaaggtcaacagcctctggtgctaggaacccgaaagtgtcaaaagcaaatggtataaaa 41867951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 7760970 - 7760918
Alignment:
Q  303 gcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaa 356  Q
    |||||||||||| |||| | ||||||||||||||||||||||| || |||||||    
T  7760970 gcatgatcctttgaactct-atgtagaaggtcaacaacctctggtgatagaaaa 7760918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 9685518 - 9685458
Alignment:
Q  326 tagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||| ||| |||||  || ||||||||| ||| |||| ||||||||||||||||||    
T  9685518 tagaaggtccacagcctctagtgctagaaaatcaaaagtgtcaaaagcaaatggtataaaa 9685458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 17344638 - 17344702
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||| ||| || || ||| |||  |||| |||| ||||||||||||||||||    
T  17344638 tatgtagaaggtcaacagcctatggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaa 17344702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 29808075 - 29808139
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||| ||||||||||||||| |||| ||| ||||  | |||||  ||||||||||||||||||    
T  29808075 tatgtaaaaggtcaacaacctccgatgctaggaaataaataatgtgaaaagcaaatggtataaaa 29808139  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 389
Target Start/End: Original strand, 2898681 - 2898769
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaact 389  Q
    ||||||||||| ||| |||| | ||||||||||||||||||||||| || ||| ||| ||||| | || |||||||||||||||||||||    
T  2898681 tatgcatgatcttttgaactct-atgtagaaggtcaacaacctctggtgctaggaaaccgaaagtatcaaaagcaaatggtataaaaact 2898769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 386
Target Start/End: Complemental strand, 4862117 - 4862032
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||| ||||| |||| | |||||||||||||||||| | || |||||| ||||||||| |||| ||||||||| ||||||||    
T  4862117 tatgcatgaccctttgaactct-atgtagaaggtcaacaacttttggtgttaggaaatcgaaagtgtcaaaagcaaattgtataaaa 4862032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 29169900 - 29169836
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||| ||||||||||| || ||| ||| ||||| |||| ||||||||||||||||||    
T  29169900 tatgtagaaggttaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaa 29169836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 34644566 - 34644630
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||||||||||||| ||| ||  ||||| |||| ||| ||||||||||||||    
T  34644566 tatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaa 34644630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 45659751 - 45659691
Alignment:
Q  326 tagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||| |||||| || ||| ||||||||| |||| ||||||||||||||||||    
T  45659751 tagaaggtcaacagcctctggtgataggaaatcgaaagtgtcaaaagcaaatggtataaaa 45659691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 28041234 - 28041168
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||||||||||||||  |||||| || ||| ||| ||||| |||| ||||||||||||||||||||    
T  28041234 tatgtagaaggtcaaccgcctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaac 28041168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 24177618 - 24177553
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaa 387  Q
    |||||||||||| |||| ||||||||| ||| ||| ||||| |||| ||| |||||||||||||||    
T  24177618 tatgtagaaggtaaacagcctctgatgctaggaaaccgaaactgtcaaaaacaaatggtataaaaa 24177553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 31737430 - 31737366
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||| ||||| | ||||| ||| ||||||||||||| |||| ||| ||||||||||||||    
T  31737430 tatgtagaatgtcaatagcctctaatgctagaaaatcgaaagtgtcaaaaacaaatggtataaaa 31737366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 21473003 - 21473069
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    ||||||||||||||||| |||||| || ||| |||  | || |||| ||||||||||||||||||||    
T  21473003 tatgtagaaggtcaacagcctctggtgctaggaaactgcaagtgtcaaaagcaaatggtataaaaac 21473069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 2764478 - 2764543
Alignment:
Q  321 ttatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||||||||||||| ||| ||   |||| |||| |||| |||||| ||||||    
T  2764478 ttatgtagaaggtcaacaacctctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaa 2764543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 22346897 - 22346958
Alignment:
Q  324 tgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaa 385  Q
    |||||||||||||||||||||| |  ||| ||| ||||| |||| |||||||| ||||||||    
T  22346897 tgtagaaggtcaacaacctctgctactaggaaaccgaaagtgtcaaaagcaaaaggtataaa 22346958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 385
Target Start/End: Original strand, 16500033 - 16500097
Alignment:
Q  321 ttatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaa 385  Q
    |||||||||||||||||| ||||| ||| ||| || || ||| |||| ||||||||| |||||||    
T  16500033 ttatgtagaaggtcaacagcctctaatgctaggaagtcaaaagtgtcaaaagcaaatagtataaa 16500097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 50314731 - 50314667
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||| ||||||||| |||  |||||| ||||  |||||||| |||| |||||||||||||    
T  50314731 tatgtagaaagtcaacaacatcttgtgttaggaaataaaaaatgtcaaaagtaaatggtataaaa 50314667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 386
Target Start/End: Original strand, 24125007 - 24125092
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||| | ||| |||| |||||||||||| |||||||||||| || ||| ||||| ||| |||| ||||||||||||||||||    
T  24125007 tatgcatgaccttttgaact-ttatgtagaaggccaacaacctctggtgctaggaaatcaaaattgtcaaaagcaaatggtataaaa 24125092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 386
Target Start/End: Original strand, 8115792 - 8115875
Alignment:
Q  301 atgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||| |||| |||||||||||||||||||||||| || ||| |||| | ||| |||| || |||||||||||||||    
T  8115792 atgcatgatcctttgaact-ttatgtagaaggtcaacaacctctcat-ttaaaaaaccaaaagtgtcaaatgcaaatggtataaaa 8115875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 8540487 - 8540418
Alignment:
Q  319 tattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaac 388  Q
    |||||||||||| |||||||||||||||||||||||| | |||| |||| || ||| |||  ||||||||    
T  8540487 tattatgtagaaagtcaacaacctctgatgttagaaagttgaaagtgtcaaatgcagatgacataaaaac 8540418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 3187969 - 3188033
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||| |||||||||||||| ||| ||  ||||| | || ||||||||||||||||||    
T  3187969 tatgtagaaggttaacaacctctgatgctaggaagccgaaagtttcaaaagcaaatggtataaaa 3188033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 386
Target Start/End: Original strand, 38815273 - 38815358
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||| ||||| |||| | |||||||||||||||| |||||| || ||| ||   |||| |||| ||||||||||||||||||    
T  38815273 tatgcatgaccctttgaactct-atgtagaaggtcaacaccctctggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaa 38815358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 8619814 - 8619878
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||| ||| |||||||||||||| |||||||||  | |||||||  ||| ||||||||||||||    
T  8619814 tatgtcgaaagtcaacaacctctggtgttagaaagccaaaaatgttaaaaacaaatggtataaaa 8619878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 959583 - 959643
Alignment:
Q  325 gtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaa 385  Q
    ||||||||||||||||||||| || ||| ||| |||||||||| ||| |||||||||||||    
T  959583 gtagaaggtcaacaacctctggtgctaggaaaccgaaaatgtcaaaaacaaatggtataaa 959643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 33220818 - 33220754
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||||||| |||| ||| ||  ||||| |||| ||||||||||||||||||    
T  33220818 tatgtagaaggtcaacaacctcggatgctaggaagccgaaagtgtcaaaagcaaatggtataaaa 33220754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 4166049 - 4165965
Alignment:
Q  301 atgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||| | |||||||| | ||||||||||||||||||||||| || ||| ||  ||||| |||| |||||||||| |||||||    
T  4166049 atgcatgaccttttaaactct-atgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaa 4165965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 4206703 - 4206639
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||||||||||| || ||| ||  ||||| |||| |||||||||| |||||||    
T  4206703 tatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaa 4206639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 28625909 - 28625995
Alignment:
Q  300 tatgcatgatcctttaaactattatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaa 387  Q
    ||||||||| | ||| |||| ||||||||||| ||||||||||||| || ||| |||| |||| |||  ||| |||||||||||||||    
T  28625909 tatgcatgaccttttgaact-ttatgtagaagctcaacaacctctggtgctaggaaattgaaagtgtaaaaaacaaatggtataaaaa 28625995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 13398289 - 13398224
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaaa 387  Q
    ||||||||| ||||||||| ||||||||||| || || ||||| || |||| |||| |||||||||    
T  13398289 tatgtagaatgtcaacaacttctgatgttaggaagtcaaaaatatcaaaagtaaatagtataaaaa 13398224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 17249412 - 17249348
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||  ||||||||| ||| ||  | ||| |||| ||||||||||||||||||    
T  17249412 tatgtagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatggtataaaa 17249348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 34304496 - 34304560
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    ||||||||||||||||| | ||||||| ||| ||  | ||| |||| ||||||||||||||||||    
T  34304496 tatgtagaaggtcaacatcatctgatgctaggaagcccaaagtgtcaaaagcaaatggtataaaa 34304560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 103107 - 103170
Alignment:
Q  323 atgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtataaaa 386  Q
    |||||||||||||||| |||||| || ||| ||| ||||| |||| ||||||||||||||||||    
T  103107 atgtagaaggtcaacagcctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaa 103170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 383
Target Start/End: Original strand, 6334 - 6395
Alignment:
Q  322 tatgtagaaggtcaacaacctctgatgttagaaaatcgaaaatgtcgaaagcaaatggtata 383  Q
    ||||||||||||||||| |||||| || ||| |||  |||| |||| |||||||||||||||    
T  6334 tatgtagaaggtcaacagcctctggtgctaggaaactgaaagtgtcaaaagcaaatggtata 6395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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