View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_46 (Length: 397)
Name: NF11928_low_46
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 108 - 381
Target Start/End: Original strand, 2448646 - 2448922
Alignment:
| Q |
108 |
ttgacataatcgcactcacaattaaaattaatgcacttcgctcttaaaggatatatacacactcgttttggacaatcagctggagtattgcagggaataa |
207 |
Q |
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| T |
2448646 |
ttgacataatcgcactcacaattaaaattaatgcacttcgctcttagaggatatatacacactcgttttggacaatcagctggagtattgcaggggatag |
2448745 |
T |
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| Q |
208 |
gagctgcaacgtcaaataaaaacaatcaatgatataaaaggtgatcaaatatatattgagtatttatatcttaaagaagtaaatttaaaaatattgtgaa |
307 |
Q |
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| T |
2448746 |
gagctgcaacgtcaaataaaaacaatcaatgatataaaaggtgatcaaatatatattgagtatttatatcttaaagaagtaaatttaaaaatattgtgaa |
2448845 |
T |
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| Q |
308 |
aaatgacttactgcagttgattat---aagaaatagcgaaagaaatatgattagaacataaacaaacatgtaaattt |
381 |
Q |
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| T |
2448846 |
aaatgacttactgcagttgattataacaagaaatagtgaaagaaatatgattagaacataaacaaacatgtaaattt |
2448922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 2448600 - 2448641
Alignment:
| Q |
5 |
gagaaactgaagtttctctcactgacttatagtaaacattta |
46 |
Q |
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| T |
2448600 |
gagaaattgaagtttctctcactaacatatagtaaacattta |
2448641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 20729559 - 20729516
Alignment:
| Q |
330 |
ataagaaatagcgaaagaaatatgattagaacataaacaaacat |
373 |
Q |
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| T |
20729559 |
ataagaaatagagaaagaaatatgatcaaaacataaacaaacat |
20729516 |
T |
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