View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_48 (Length: 391)
Name: NF11928_low_48
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 88 - 384
Target Start/End: Original strand, 37959427 - 37959715
Alignment:
| Q |
88 |
atctatgaatgttttaatccttttcgtattcaattctttataaagatgactggtgaagtagtgacgagtgtcctctcctataaagctgaggaacacatca |
187 |
Q |
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| T |
37959427 |
atctatgaatgttttaatccttttcgtattcaattctttataaagatgactggtgaagtagtgacgagtgtcctctcctctaaagctgaggaacacatca |
37959526 |
T |
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| Q |
188 |
tacgttgttggagttgttgggtaagacatagcaatagcactacagcagaattattggtaaccaac-aacggaagaagctcaatttgtttactgtttctcg |
286 |
Q |
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| T |
37959527 |
tacgttgttgg---------gtgagacatacaaatagcactatagcagaattattggtaaccaaccaacggaaggagctcaatttgtttactgtttctcg |
37959617 |
T |
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| Q |
287 |
gttttgtatgccttttgcctttagaatgcatgaacatttataaagacttgttggagcttaaacctccatgtattttcggagtatcttgttctctgctt |
384 |
Q |
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| T |
37959618 |
gttttgtatgccttttgcctttagaatgcatgaacatttataaagacttgttggagcttaaacctccatgtattttcgaagtatcttgttctctgctt |
37959715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 37959377 - 37959423
Alignment:
| Q |
17 |
acataaatggatgattcttcaattgctttgatcagggattgagaaat |
63 |
Q |
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| T |
37959377 |
acataaatggatgattcttcaattgctttgatcagggattgagaaat |
37959423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 37927984 - 37927812
Alignment:
| Q |
16 |
cacataaatggatgattcttcaattgctttgatcagggattgagaaatctcatcacctctctcaagtttatcatctatgaatgttttaatccttttcgta |
115 |
Q |
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| T |
37927984 |
cacataaattgttgattcttctattgctttgtctagtgctggtgaaatttcttcgcctctgccaagtctataatctataaatgtttcaatattttttcca |
37927885 |
T |
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| Q |
116 |
ttcaattctttataaagatgactggtgaagtagtgacgagtgtcctctcctataaagctgaggaacacatcat |
188 |
Q |
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| T |
37927884 |
tgcaattctgcataaagatgacttgtgaagttgtcacgagtatcctctcctctgaagctgaggaacacatcat |
37927812 |
T |
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