View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11928_low_50 (Length: 386)
Name: NF11928_low_50
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_50 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 192 - 368
Target Start/End: Original strand, 36881597 - 36881773
Alignment:
| Q |
192 |
gagacaccatttttggttgcagcgaaaaatggaatagttgaactggttaacgaatttctagacaaaattccaagtgccattcatgacacaaactcaagga |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36881597 |
gagacaccatttttggttgcagcgaaaaatggaatagttgaactggttaacgaatttctagacaaaattccaagtgccattcatgacacaaactcaagga |
36881696 |
T |
|
| Q |
292 |
aagaaaatgtattgcatgttgcagtgaagtcaagacaacccgttattgttgagacattgagaatgagaatgattaag |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36881697 |
aagaaaatgtattgcatgttgcagtgaagtcaagacaacccgttattgttgagacattgagaatgagaatgattaag |
36881773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 36881422 - 36881537
Alignment:
| Q |
17 |
atgaatggcatttttacaccttccattgcatttgtcactggcaggtgaaaccaaaaggtttgatgaacaagaacaaaaacctaaacaaaatgagatacag |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36881422 |
atgaatgacatttttacaccttccattgcatttgtcactggcaggtgaaaccaataggttcgatgaacaagaacaaaaacctaaagaaaatgagatacag |
36881521 |
T |
|
| Q |
117 |
gaaaccatatcaactc |
132 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36881522 |
aaaaccatatcaactc |
36881537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 194 - 357
Target Start/End: Original strand, 36892689 - 36892852
Alignment:
| Q |
194 |
gacaccatttttggttgcagcgaaaaatggaatagttgaactggttaacgaatttctagacaaaattccaagtgccattcatgacacaaactcaaggaaa |
293 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||| | ||||||||||||||| |||| | |||||| ||| |
|
|
| T |
36892689 |
gacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaagtaccaagtgccattcataacactacctcaagaaaa |
36892788 |
T |
|
| Q |
294 |
gaaaatgtattgcatgttgcagtgaagtcaagacaacccgttattgttgagacattgagaatga |
357 |
Q |
| |
|
||||||||||||| ||||||||| || | || ||||| ||||||||||||| |||||||||| |
|
|
| T |
36892789 |
gaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgagaatga |
36892852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University