View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_51 (Length: 379)
Name: NF11928_low_51
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 35946966 - 35947310
Alignment:
| Q |
17 |
gaagtaataccacaaaaaccagnnnnnnncgcaacaaccaatcaccattattatttcttataattattattgagagatcctaacttaataatattatact |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35946966 |
gaagtaataccacaaaaaccagaaaaaa-cgcaacaaccaatcatcattattatttcttataattattattgagagatcctaacttaataatattatact |
35947064 |
T |
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| Q |
117 |
tattgtgttatgtttctccaaataaaatgagaaatttaagtttttgttgtcccacataagttatttaaatcacaccacacacaaaatcactctttcttnn |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35947065 |
tattgtgttatgtttctccaaataaaatgagaaatttaagtttttgttgtcccacataagtaatttaaatcacaccacacacaaaatcactctttcttaa |
35947164 |
T |
|
| Q |
217 |
nnnnnttgttacaaagttacacatctaaccattgttctcaaaatcaagattttgcttctgatagaaagaggatatcaaaattgaaaattataaaatcaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35947165 |
aaaaattgttacaaagttacacatctaaccattgttctcaaaatcaagattttgcttctgatagaaagaggatatcaaaattgaaaattgtaaaatcaaa |
35947264 |
T |
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| Q |
317 |
atcgagaattttattaaactacatttataggatccatacaagatag |
362 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35947265 |
atcgaggattttattaaactacatttataggatccatacaagatag |
35947310 |
T |
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