View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_53 (Length: 376)
Name: NF11928_low_53
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 31528612 - 31528276
Alignment:
| Q |
15 |
atgaaacaagatattaggtgtaaattttgaaaatccaggtaagcacaaggtgttcaaacgagtagcaatttgtttttgatctgagtattgtataatttaa |
114 |
Q |
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| T |
31528612 |
atgaaacaagatattaggtgtaaattttgaaaatccaggtaagaacaaggtgttcaaacgagtagcaatttgtttt-gatctgagtattgtataatttaa |
31528514 |
T |
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| Q |
115 |
cataattaagagatacaatatgcttgtgcaccaaaacagaccttaaatacccaaattgcaataaaaacaaatgtacatctgagacaattactactagaaa |
214 |
Q |
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| T |
31528513 |
cataattaagagatacaatatgcttgtgcaccaaaacagaccttaaatacccaaattgcaataaaaacaaatgtacatctgagacaattactactacaaa |
31528414 |
T |
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| Q |
215 |
gcttactttttattggttcagtattaagccaaggataagaaatatccaagtggtgaaaagggcttgggctaataacaataacaagtatgattatgaaggt |
314 |
Q |
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| T |
31528413 |
gcttactttttattggtttagtattaagccaaggataagaaatatccaagtgatgaaaagggcttgggctaata------acaagtatgattatgaaggt |
31528320 |
T |
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| Q |
315 |
tgaaagagtacactgaaattaattggtgatacatatggattttc |
358 |
Q |
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| T |
31528319 |
tgaaagagtacactgaaattaattggtgatacatatggattttc |
31528276 |
T |
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