View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_54 (Length: 372)
Name: NF11928_low_54
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_54 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 44459285 - 44458914
Alignment:
| Q |
1 |
aagaagaatttgctgcatgaagtcttggatgctgatttaacttcatagcagtgtcagggaaaaatatgtgcaaattaattcctgtggagtatggtgtctc |
100 |
Q |
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| T |
44459285 |
aagaagaatttgctgcatgaagtcttggatgctgatttaacttcatagcagtgtcagggaaaaatatgtgcaaattaattcctgtggagtatggtgtctc |
44459186 |
T |
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| Q |
101 |
atacttgctcacatttttggatccagaagatgaggaataggacaaacaattcttgccacaacttttatgtggctgcttgtcagaatttaaaaatgaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459185 |
atacttgctcacatttttggatccagaagatgaggaataggacaaacaattcttgccacaacttttatgtggctgcttgtcagaatttaaaaatgaaaac |
44459086 |
T |
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| Q |
201 |
ccacaagcttccttcattttctcggatgaaaaagagtgtctactcttgaacatatgctgcaagtcctgtcggaacttttcaattgaggttttacctgaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459085 |
ccacaagcttccttcattttctcggatgaaaaagagtgtcttcttttgaacatatgctgcaagtcctgtcggaacttttcaattgaggttttacctgaat |
44458986 |
T |
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| Q |
301 |
aaccaatgcggaaccattcatgtaacaatggtgtaaaagctttactgacagaattatttccctcctttatgc |
372 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44458985 |
aaccaatgcggaaccattcatgtaacaatggtgcaaaagctttactgacagaattatttccctcctttatgc |
44458914 |
T |
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