View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11928_low_55 (Length: 368)
Name: NF11928_low_55
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_55 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 13961080 - 13960721
Alignment:
| Q |
1 |
gccccttggttacttgtagcatccaaagcagcaagtgaataaggaactccagacttcacaatccaagtatcacgatcggttgcattcgcaatctcaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13961080 |
gccccttggttacttgtagcatccaaagcagcaagtgaataaggaactccagacttcacaatccaagtatcacgatcggttgcattcgcaatctcaaaga |
13960981 |
T |
|
| Q |
101 |
atttaccgggataaaaagcagctgcttcagttgaagatatactcttaacaccaggccatttaactctttttgatgtgtcagcaccaggacctttattatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13960980 |
atttaccgggataaaaagcagctgcttcagttgaagatatactcttaacaccaggccatttaactctttttgatgtgtcagcaccaggacctttattatt |
13960881 |
T |
|
| Q |
201 |
atactcataaaatgtacatgtatctttaaaagcacttcccatccatggcatgtaaccttcaggatcaaaaatgtcatcgatgtttgaatccataataaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13960880 |
gtactcataaaatgtacatgtatctttaaaagcacttcccatccatggcatgtaaccttcaggatcaaaaatgtcatcgatgtttgaatccataataaca |
13960781 |
T |
|
| Q |
301 |
actttggaatatgacttccatggtcttcctaggtaagctattttggggtctatctctgct |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13960780 |
actttggaatatgacttccatggtcttcctaggtaagctattttggggtctatctttgct |
13960721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 32 - 347
Target Start/End: Complemental strand, 13968213 - 13967898
Alignment:
| Q |
32 |
caagtgaataaggaactccagacttcacaatccaagtatcacgatcggttgcattcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagt |
131 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| || ||| | |||||||| || | |
|
|
| T |
13968213 |
caagtgaataaggaacaccagacttcacaatccaagtatcacgtgcagttgcattaacaatctcaaagaatttaccagggtaatattcagctgctacatt |
13968114 |
T |
|
| Q |
132 |
tgaagatatactcttaacaccaggccatttaactctttttgatgtgtcagcaccaggacctttattattatactcataaaatgtacatgtatctttaaaa |
231 |
Q |
| |
|
||||| || | |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
13968113 |
tgaagttaaaaccttaacaccatgccatttaactcttaaatttgtgtcagcaccaggacctttattattgtactcataaaaagtacatgtatccttaaaa |
13968014 |
T |
|
| Q |
232 |
gcacttcccatccatggcatgtaaccttcaggatcaaaaatgtcatcgatgtttgaatccataataacaactttggaatatgacttccatggtcttccta |
331 |
Q |
| |
|
|||| ||||| | |||||||||||||||||| |||| || |||| ||| |||| ||||| || ||||||||||||||| ||||||||||||||||| |
|
|
| T |
13968013 |
gcacctcccaccattggcatgtaaccttcaggggcaaacatagcatcaatggttgagtccattatgacaactttggaatatagcttccatggtcttccta |
13967914 |
T |
|
| Q |
332 |
ggtaagctattttggg |
347 |
Q |
| |
|
|||||| || |||||| |
|
|
| T |
13967913 |
ggtaagataatttggg |
13967898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 13978299 - 13978096
Alignment:
| Q |
32 |
caagtgaataaggaactccagacttcacaatccaagtatcacgatcggttgcattcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagt |
131 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| || ||| | |||||||| || | |
|
|
| T |
13978299 |
caagtgaataaggaacaccagacttcacaatccaagtatcacgtgcagttgcattaacaatctcaaagaatttaccagggtaatattcagctgctacatt |
13978200 |
T |
|
| Q |
132 |
tgaagatatactcttaacaccaggccatttaactctttttgatgtgtcagcaccaggacctttattattatactcataaaatgtacatgtatctttaaaa |
231 |
Q |
| |
|
||||| || | |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
13978199 |
tgaagttaaaaccttaacaccatgccatttaactcttaaatttgtgtcagcaccaggacctttattattgtactcataaaaagtacatgtatccttaaaa |
13978100 |
T |
|
| Q |
232 |
gcac |
235 |
Q |
| |
|
|||| |
|
|
| T |
13978099 |
gcac |
13978096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University