View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_56 (Length: 367)
Name: NF11928_low_56
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 30008730 - 30009065
Alignment:
| Q |
19 |
gtatgaatgccttctcttgaaaccttcgaaacttacccttttggcaccttcaatggcgacccatttcctcacaactccattttcttcagttctcaccaac |
118 |
Q |
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| T |
30008730 |
gtatgaatgccttctcttgaaacctttgaaacttacccttttggcaccttcaatggcgacccatttcctcacaactccattttcttcagttctcaccaac |
30008829 |
T |
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| Q |
119 |
cactctctaaaaccaccatcactctttcatgccaccctttctgcaaagtcaacccatctttctctcccttgcattagaaaaagctccattatgtgtagcc |
218 |
Q |
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| T |
30008830 |
cactctctaaaaccaccatcactctttcatgccaccctttctgcaaagtcaacccctctttctctcccttgcattagaaaaagctccattatgtgtagcc |
30008929 |
T |
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| Q |
219 |
caacaactcttacaaggctcaattccagtttcttgcaaaagggtgctcatggaaattccaaaagcagacaactttcaattaaatcaactggaactgattc |
318 |
Q |
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| T |
30008930 |
caacaactcttacaaggctcaattccagtttcttgcaaaagggtgctcatggaaattccaaaagcagacaactttcaattaaatcaactggaactgattc |
30009029 |
T |
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| Q |
319 |
tgggagcacttcttcactgacccaaaatgtgagtct |
354 |
Q |
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| T |
30009030 |
tgggagcacttcttcactgacccaaaatgtgagtct |
30009065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 167 - 354
Target Start/End: Original strand, 30009895 - 30010082
Alignment:
| Q |
167 |
tcaacccatctttctctcccttgcattagaaaaagctccattatgtgtagcccaacaactcttacaaggctcaattccagtttcttgcaaaagggtgctc |
266 |
Q |
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| T |
30009895 |
tcaacccctctttctctcccttgtatccaaaaacgttccattttgtgtaacctaacaactcctactatgctcaattccagtttcttgcacaagggttctc |
30009994 |
T |
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| Q |
267 |
atggaaattccaaaagcagacaactttcaattaaatcaactggaactgattctgggagcacttcttcactgacccaaaatgtgagtct |
354 |
Q |
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| T |
30009995 |
aagaaaattcaaaaagcaaacagcttttacctaaatcagctgaaactgattctgggaacacttcttcactcactcataatgtgagtct |
30010082 |
T |
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