View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_58 (Length: 364)
Name: NF11928_low_58
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 2649734 - 2649396
Alignment:
| Q |
12 |
gagacagagcgtcacgactcacaatttacagaaaaatggccgcactgttgcatgcgactgagagagacagaatgagaggctacacttcctccttgcacaa |
111 |
Q |
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| T |
2649734 |
gagacagagcgtcacgactcacaatttacagaaaaatggccgcactgttgcatgtgactgagagagacagaatgagaggctacacttcctccttgcacaa |
2649635 |
T |
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| Q |
112 |
aaaacacaatttacttttacaatcttgacttcaatttttcgagatgcaaatgatcttgtataagatctggatctaaatcgcgattttgataacattaata |
211 |
Q |
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| T |
2649634 |
aaaacacaatttacttttacaatcttgacttcaatttttcgagatgcaaatgatcttgtataagatctggatctaaatcgcgattttgataacattaata |
2649535 |
T |
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| Q |
212 |
gtatgcactatttcaatttgacaaggagcgtattatggtttttatgttttagctcttgcttttttgataatatttgtgagatagaaattcacaagataac |
311 |
Q |
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| T |
2649534 |
gtatgcactatttcaaactgacaaggagcgtattatggtttttatgttttagctcttgcttttttgataatatttgtgggattgaaattcacaagataac |
2649435 |
T |
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| Q |
312 |
ggtttcttcttgttgaatgattaatctgaagatgaattt |
350 |
Q |
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| T |
2649434 |
ggtttcttcttgttgaatgattaatctgaaaatgaattt |
2649396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 2642236 - 2641903
Alignment:
| Q |
16 |
cagagcgtcacgactcacaatttacagaaaaatggccgcactgttgcatgcgactgagagagacagaatgagaggctacacttcctccttgcacaaaaaa |
115 |
Q |
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| T |
2642236 |
cagagagtcgcgactcacaatttagagaaaaatggccacactgttgcgtgcgactgagagagacagaatgagaggccgcacttgctccttgcacaaaaaa |
2642137 |
T |
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| Q |
116 |
cacaatttacttttacaatcttgacttcaatttttcgagatgcaaatgatcttgtataagatctggatctaaatcgcgattttgataacattaatagtat |
215 |
Q |
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| T |
2642136 |
cccgatttacttttacaatcttgacttcaatttttcaagctgcaaatggtcttttttaagatctggatctaaatcgtgattttgataacattgattgtat |
2642037 |
T |
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| Q |
216 |
gcactatttcaatttgacaaggagcgtattatggtttttatgttttagctcttgcttttttgataatatttgtgagatagaaattcacaagataacggtt |
315 |
Q |
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| T |
2642036 |
gcactgattcaaattgacaaggagcgtattatgatttttatgttttagctcttgctttttt-ataatgtttgagggatagaaattcacaagataacggtt |
2641938 |
T |
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| Q |
316 |
tcttcttgttgaatgattaatctgaagatgaattt |
350 |
Q |
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| T |
2641937 |
tcttcttgttgaatgattaatctgaaaatgaattt |
2641903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 157 - 341
Target Start/End: Complemental strand, 7332345 - 7332161
Alignment:
| Q |
157 |
gcaaatgatcttgtataagatctggatctaaatcgcgattttgataacattaatagtatgcactatttcaatttgacaaggagcgtattatggtttttat |
256 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||| |||| || ||||||||||||| ||||| |||||||||||| | |||||||||||| |
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| T |
7332345 |
gcaaatgatcttgtacaagatctggatctaaatcacgattttggtaaccttgatagtatgcactaattcaaattgacaaggagcatcatatggtttttat |
7332246 |
T |
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| Q |
257 |
gttttagctcttgcttttttgataatattt-gtgagatagaaattcacaagataacggtttcttcttgttgaatgattaatctgaa |
341 |
Q |
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| T |
7332245 |
gttttagctcttgct-ttttgatagcgtttagtggattacaaatttataagataactgtttattcttgttaaatgattaatctgaa |
7332161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 1429756 - 1429666
Alignment:
| Q |
185 |
taaatcgcgattttgataacattaatagtatgcactatttcaatttgacaaggagcgtattatggtttttatgttttagctcttgcttttt |
275 |
Q |
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||||||| |||||||| ||| || ||| |||||| | ||||| ||||||| ||| | ||||||||||||||||||| |||||||||||| |
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| T |
1429756 |
taaatcgtgattttgaaaaccttgatatcatgcacaaattcaaattgacaatgagaatgttatggtttttatgttttatctcttgcttttt |
1429666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 2495445 - 2495497
Alignment:
| Q |
223 |
ttcaatttgacaaggagcgtattatggtttttatgttttagctcttgcttttt |
275 |
Q |
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| T |
2495445 |
ttcaaattgacaatgagcctcttatggtttttatgttttatctcttacttttt |
2495497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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