View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_59 (Length: 353)
Name: NF11928_low_59
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 49546551 - 49546880
Alignment:
| Q |
10 |
ataggaccacaactcatgtttattctagaaagatatagcaagggtcacaggagatggataaatggaagaagatggactgaatgagaagtatgctgagttg |
109 |
Q |
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| T |
49546551 |
ataggaccacaactcatgtttattctagaaagatatagcaagggtcacaggagatagataaatggaagaagatggactgaatgagaagtatgctgagttg |
49546650 |
T |
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| Q |
110 |
gaaaacagggaaaataaagaatcctaatataatgagtatggggtgaaaaatatattggaataaagtgctataaatggggttggccagtccatcattccat |
209 |
Q |
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| T |
49546651 |
gaaaacagggaaaataaagaatcctaatataatgagtatggggtg-aaaatatattggaataaagtgctataaatggggttggccagtccatcattccat |
49546749 |
T |
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| Q |
210 |
agtatttcttccttaggtttaatggataatgagccnnnnnnnntatatgaactgaattaggaggaggatctgttaaaagaaaaggacaaatgaggaatcc |
309 |
Q |
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| T |
49546750 |
agtatttcttctttaggtttaatggataatgagccaaaaaaaaaatatgagctgaattaggaggaggatctgttaaaagaaaaagacaaatgaggaatca |
49546849 |
T |
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| Q |
310 |
tgacataatgattacaatgtgggagtctctt |
340 |
Q |
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| T |
49546850 |
tgacataatgattacaatgtgggagtctctt |
49546880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 49443632 - 49443753
Alignment:
| Q |
18 |
acaactcatgtttattctagaaagatatagcaagggtcacaggagatggataaatgg---aagaagatggactgaatgagaagtatgctgagttggaaaa |
114 |
Q |
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| T |
49443632 |
acaactcatgtttattctagaaagagatagcaaggggcacatgagatagataaatggaaaaagaggataggctgaatgaaaagtatgttgagttggaaaa |
49443731 |
T |
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| Q |
115 |
cagggaaaataaagaatcctaa |
136 |
Q |
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| T |
49443732 |
aagggaaaataaagaatcctaa |
49443753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 47988507 - 47988551
Alignment:
| Q |
10 |
ataggaccacaactcatgtttattctagaaagatatagcaagggt |
54 |
Q |
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| T |
47988507 |
ataggatcacaactcatgtttatcctagaaagagatagcaagggt |
47988551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 49443886 - 49443948
Alignment:
| Q |
256 |
atgaactgaattaggaggaggatctgttaaaagaaaaggacaaatgaggaatcctgacataatg |
319 |
Q |
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| T |
49443886 |
atgagctgaatgaggaggaggatctgttggaagaaaaaga-aaatgaggaatcctaacataatg |
49443948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 47872709 - 47872680
Alignment:
| Q |
10 |
ataggaccacaactcatgtttattctagaa |
39 |
Q |
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| T |
47872709 |
ataggaccacaactcatgtttattctagaa |
47872680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 14962116 - 14961990
Alignment:
| Q |
10 |
ataggaccacaactcatgtttattctagaaagatatagcaagggtcacaggagatggataaatggaa---gaagatggactgaatgagaagtatgctgag |
106 |
Q |
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| T |
14962116 |
ataggaccacaggtcaagtttattccagaaagagatagcaaaggacacagaagatagataagtggcatgagaggatgggttgaatgagaagtatgctgag |
14962017 |
T |
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| Q |
107 |
ttggaaaacagggaaaataaagaatcc |
133 |
Q |
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| T |
14962016 |
taggaaaataggggaaataaagaatcc |
14961990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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