View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11928_low_6 (Length: 790)
Name: NF11928_low_6
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 621; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 69 - 780
Target Start/End: Complemental strand, 14085784 - 14085070
Alignment:
| Q |
69 |
gttgagtttatgcatgaatattaatgtatatagcttctgacttgtaaatgcttatgcttgttgagtttatccatgtctttgatgcatactttgttgagtt |
168 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085784 |
gttgtgtttatgcatgaatattaatgtatatagcttctgacttgtaaatgcttatgcttgttgagtttatccatgtctttgatgcatactttgttgagtt |
14085685 |
T |
|
| Q |
169 |
tatccatattttgttgattcttatgcttcttcctttgagttcattgtgtctttgtgtctttcttattctaatggtctgttattcattttgnnnnnnnaga |
268 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
14085684 |
tatccatattttgttgattcttatgcttcttcctttgagttcattgtgtctttgtgtctttcttattctaatggtctgttatttattttgtttttttaga |
14085585 |
T |
|
| Q |
269 |
cacatggaaagtggtactgccagtgtgaatcctttgcctcaaattccaattctagttgctagaactcaaggagtctcgaggctgctgagttactgcgagg |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085584 |
cacatggaaagtggtactgccagtgtgaatcctttgcctcaaattccaattctagttgctagaactcaaggagtctcgaggctgctgagttactgcgagg |
14085485 |
T |
|
| Q |
369 |
ccaaggacatgaacatgctgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttggagacattttacgaagaaaagagac |
468 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085484 |
ccaaggacatgaacatgttgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttggagacattttacgaagaaaagagac |
14085385 |
T |
|
| Q |
469 |
gcatacgccacattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcgaactaacaacatgcttaaacatatgaatgtttgtccaa |
568 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
14085384 |
gcatacgccgaattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcaaactaacaacatgcttaaacatatgaatgtttgtccaa |
14085285 |
T |
|
| Q |
569 |
aaacatgaaggtaattcttttactcttttaggttaatattggtttagca---ttgttttaactttgtatttgatttagtctatgtttactctgttttgat |
665 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14085284 |
aaacatgaaggtgattcttttactcttttagggtaatattggtttagcatttttgttttaactttgtatttgatttagtctatgtttactctgttttgat |
14085185 |
T |
|
| Q |
666 |
agttgtctttgattttagtttgctatactgtcatattttatggctttgatttgttagttactaatgtatattttctttannnnnnnnnaacaggttaaca |
765 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14085184 |
agttgtctttgattttagtttgctatactgtcatattttatggctttgatttgttagttactaatgtatattttctttatttttttttaacaggttaaca |
14085085 |
T |
|
| Q |
766 |
aatattctttctgtg |
780 |
Q |
| |
|
||||||||||||||| |
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|
| T |
14085084 |
aatattctttctgtg |
14085070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 14085737 - 14085682
Alignment:
| Q |
24 |
atgcttatgttggttgagtttatgcatgttttttatgcatattttgttgagtttat |
79 |
Q |
| |
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||||||||| | ||||||||||| ||||| ||| ||||||| |||||||||||||| |
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|
| T |
14085737 |
atgcttatgcttgttgagtttatccatgtctttgatgcatactttgttgagtttat |
14085682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 3e-56; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 366 - 739
Target Start/End: Original strand, 12189888 - 12190254
Alignment:
| Q |
366 |
aggccaaggacatgaacatgctgagttagtgctaaaactaaagaaaagaaaacatgatagacatccttcaatggcttggagacattttacgaagaaaaga |
465 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||| |||||||| | |
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|
| T |
12189888 |
aggccaaggacctgaacatgctaaggtagtgctaaaactaaagaaaagaaaacctgctagacctccttcaatggtttggagacattttatgaagaaaaaa |
12189987 |
T |
|
| Q |
466 |
gacgcatacgccacattttgtaacttctgttttgcttcttttgcgtcaaatagttctagccatcgaactaacaacatgcttaaacatatgaatgtttgtc |
565 |
Q |
| |
|
||| | ||| |||||||||| || || ||||||||| |||||| ||| | ||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
12189988 |
gacac---tgcc---ttttgtaactattgcttcacttcttttgtttcaaatgcttccaaccatcgaactaacaacatgcttaaacacatgatgatttgtc |
12190081 |
T |
|
| Q |
566 |
caaaaacatgaaggtaattcttttactcttttaggttaatattggtttagca---ttgttttaactttgtatttgatttagtctatgtttactctgtttt |
662 |
Q |
| |
|
|||||||||||||||| || ||||| | | | ||| || ||| ||||| | || || ||||||||||||||||||||||||| || ||||| |||| |
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|
| T |
12190082 |
caaaaacatgaaggtagtttttttattactctgagtt-atgttgatttagtaattttattgtaactttgtatttgatttagtctattttaactctatttt |
12190180 |
T |
|
| Q |
663 |
gatagttgtctttgattttagtttgctatactgtcatattttatggctttgatttgttagttactaatgtatatttt |
739 |
Q |
| |
|
| ||| |||||||||| ||||||||| || ||| ||||||| |||||||||||| |||| |||||||||||||||| |
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|
| T |
12190181 |
ggtagatgtctttgatgttagtttgc--tagtgttatattttgtggctttgatttattag-tactaatgtatatttt |
12190254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 12189602 - 12189678
Alignment:
| Q |
36 |
gttgagtttatgcatgttttttatgcatattttgttgagtttatgcatgaatattaatgtatatagcttctgacttg |
112 |
Q |
| |
|
||||||||||| |||| ||| ||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
12189602 |
gttgagtttatctatgtctttgatgtatattttgttgagtttatgcatgattattaatgtctatagcttctgacttg |
12189678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 12189684 - 12189766
Alignment:
| Q |
166 |
gtttatccatattttgttgattcttatgcttcttcctttgagttcattgtgtctttgtgtctttcttattctaatggtctgtt |
248 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||| ||||||||| | ||||||| |||||||||| |||||||| |||| |
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|
| T |
12189684 |
gtttatgcatactttgttgattcttatacttcttccttggagttcattttttctttgtttctttcttatcctaatggtttgtt |
12189766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 12189826 - 12189884
Alignment:
| Q |
266 |
agacacatggaaagtggtactgccagtgtgaatcctttgcctcaaattccaattctagt |
324 |
Q |
| |
|
||||||||| ||| || |||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
12189826 |
agacacatgaaaactgatactgctagtgtgaatcctttggctcaaattccaattctagt |
12189884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 12189600 - 12189645
Alignment:
| Q |
126 |
ttgttgagtttatccatgtctttgatgcatactttgttgagtttat |
171 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||||||||||| |
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| T |
12189600 |
ttgttgagtttatctatgtctttgatgtatattttgttgagtttat |
12189645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 15978588 - 15978457
Alignment:
| Q |
39 |
gagtttatgcatgttttttatgcatattttgttgagtttatgcatgaatattaatgtatatagcttctgacttgtaaatgcttatgcttgttgagtttat |
138 |
Q |
| |
|
|||||||| ||||| ||| || |||||||| |||||||| |||| | | ||||||||||||||| ||| |||| ||||| ||| ||||||||||||| |
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|
| T |
15978588 |
gagtttatccatgtctttgatacatattttattgagtttttgcacaatttttaatgtatatagctgatgagttgttgatgctcatgtttgttgagtttat |
15978489 |
T |
|
| Q |
139 |
ccatgtctttgatgcatactttgttgagtttat |
171 |
Q |
| |
|
| |||| |||| ||| | |||||||||||||| |
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|
| T |
15978488 |
ctatgtttttg-ggcacattttgttgagtttat |
15978457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 22898744 - 22898595
Alignment:
| Q |
21 |
ttgatgcttatgttggttgagtttatgcatgttttttatgcatattttgttgagtttatgcatgaatattaatgtatatagcttctgacttgtaaatgct |
120 |
Q |
| |
|
|||||||| ||| | ||||||||||| |||| ||| ||||| | |||||| | ||||||||||| | |||||| ||| ||| |||| | || ||||| |
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|
| T |
22898744 |
ttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcctatggctgctgagtcgtttatgct |
22898645 |
T |
|
| Q |
121 |
tatgcttgttgagtttatccatgtctttgatgcatactttgttgagtttat |
171 |
Q |
| |
|
||| ||| ||| ||||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
22898644 |
catgtttgctgattttatccatgtcttt-atgcacactttgttgaatttat |
22898595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 16307808 - 16307665
Alignment:
| Q |
21 |
ttgatgcttatgttggttgagtttatgcatgttttttatgcatattttgttgagtttatgcatgaatattaatgtatatagcttctgacttgtaaatgct |
120 |
Q |
| |
|
|||||||| ||| | ||||||||||| |||| ||| ||||| | |||||| | ||||||||||| | |||||| ||| ||| |||| |||| ||||| |
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|
| T |
16307808 |
ttgatgctaatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcctatggctgctgagttgtttatgct |
16307709 |
T |
|
| Q |
121 |
tatgcttgttgagtttatccatgtctttgatgcatactttgttga |
165 |
Q |
| |
|
||| ||| ||| |||||| |||||||| ||||| |||||||||| |
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|
| T |
16307708 |
catgtttgctgattttatctatgtcttt-atgcacactttgttga |
16307665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 19975099 - 19975052
Alignment:
| Q |
116 |
atgcttatgcttgttgagtttatccatgtctttgatgcatactttgtt |
163 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||||||| |||||||| |
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|
| T |
19975099 |
atgctcatgcttgttgagtttattcatggctttgatgcacactttgtt |
19975052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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