View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_60 (Length: 350)
Name: NF11928_low_60
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 50 - 335
Target Start/End: Complemental strand, 11977595 - 11977302
Alignment:
| Q |
50 |
tggcttaatgtagatatttgaacaaagaccttgtaccttctatgtgttttgggtgtctagaattcacaagtccaaattcataacagcttatgaaaaacag |
149 |
Q |
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| T |
11977595 |
tggcttaatgtagatatttgaacaaagaccttgtaccttctctgtggtttgggtgtctacaattcacaagtccaaattcataagagcttatgataaacag |
11977496 |
T |
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| Q |
150 |
tttattggagctaataagctctaataactaataagtttctttcccacacagttctatatacacttgtgctagtagacacataagcctaaaataaactata |
249 |
Q |
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| T |
11977495 |
tttattggagctaataagctctaataactaataagtttctttcccacacagttctatatacacttgtgctagtagacacataagcctaaaataaactata |
11977396 |
T |
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| Q |
250 |
atataaacaacttctaaag-------nnnnnnnnaggg-attctaaatttattaattgttactcctttctatcaagggtttgtctaacatgtgc |
335 |
Q |
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| T |
11977395 |
atataaacaacttctaaagttttttttttttttaagggtattctaaatttattaattgttactcctttttatcaagagtttgtctaacatgtgc |
11977302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11977687 - 11977638
Alignment:
| Q |
1 |
attatttgaaagaagactactacttataattactattgaagtactttgct |
50 |
Q |
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| T |
11977687 |
attatttgaaagaagactactacttataattattattgaagtactttgct |
11977638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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