View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11928_low_62 (Length: 345)
Name: NF11928_low_62
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_62 |
 | |
|
| [»] chr3 (8 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 6 - 345
Target Start/End: Original strand, 25084957 - 25085294
Alignment:
| Q |
6 |
ggaggagcagagaggcataggaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaa |
105 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
25084957 |
ggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtgaagagaa |
25085056 |
T |
|
| Q |
106 |
tcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaa |
205 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25085057 |
tcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaa |
25085156 |
T |
|
| Q |
206 |
gactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaagacaaagaagaaacactctttag |
305 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
25085157 |
gactgtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggttttggaggttgaagaagac--agaagaaacactctttag |
25085254 |
T |
|
| Q |
306 |
tttatatgttattttcttttgccttagacttgcaattgca |
345 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
25085255 |
tttatttgttattttcttttgccttagacttgtaattgca |
25085294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 24981965 - 24982243
Alignment:
| Q |
6 |
ggaggagcagagaggcataggaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaa |
105 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24981965 |
ggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaa |
24982064 |
T |
|
| Q |
106 |
tcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaa |
205 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| |
|
|
| T |
24982065 |
tcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggaggaa |
24982164 |
T |
|
| Q |
206 |
gactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaaga |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24982165 |
gactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga |
24982243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 310
Target Start/End: Complemental strand, 24923723 - 24923419
Alignment:
| Q |
6 |
ggaggagcagagaggcataggaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaa |
105 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24923723 |
ggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaa |
24923624 |
T |
|
| Q |
106 |
tcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
24923623 |
tcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactgagcacgcaaggaggaa |
24923524 |
T |
|
| Q |
206 |
gactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaagacaaagaagaaacactctttag |
305 |
Q |
| |
|
||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
24923523 |
gacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggatttggaggttgaagaatatgaagaagaaacactctttag |
24923424 |
T |
|
| Q |
306 |
tttat |
310 |
Q |
| |
|
||||| |
|
|
| T |
24923423 |
tttat |
24923419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 24497522 - 24497234
Alignment:
| Q |
6 |
ggaggagcagagaggcataggaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaa |
105 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24497522 |
ggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaa |
24497423 |
T |
|
| Q |
106 |
tcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaa |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24497422 |
tcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaa |
24497323 |
T |
|
| Q |
206 |
gactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaagacaaagaagaa |
294 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||||| |
|
|
| T |
24497322 |
gactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttttggaggttgatgaagaaaaacaagaa |
24497234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 336
Target Start/End: Complemental strand, 24920149 - 24919817
Alignment:
| Q |
6 |
ggaggagcagagaggcataggaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaa |
105 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24920149 |
ggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtgaagagaa |
24920050 |
T |
|
| Q |
106 |
tcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaa |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||| || |||||||| |
|
|
| T |
24920049 |
tcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactgagcacgctaggaggaa |
24919950 |
T |
|
| Q |
206 |
gactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggttga---agaagacaaagaagaaacactctt |
302 |
Q |
| |
|
||| || || ||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||| |||||||| |||| || |
|
|
| T |
24919949 |
gacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgctgaagatgaagaagaagcact-tt |
24919851 |
T |
|
| Q |
303 |
tagtttatatgttattttcttttgccttagactt |
336 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||||| |
|
|
| T |
24919850 |
tagtttattttttattttattttgccttagactt |
24919817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 42 - 293
Target Start/End: Complemental strand, 31825784 - 31825533
Alignment:
| Q |
42 |
aacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaagaaaccagaggtgtct |
141 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31825784 |
aacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtct |
31825685 |
T |
|
| Q |
142 |
tgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgttgtctatgctttgaa |
241 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| || |||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
31825684 |
tgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaa |
31825585 |
T |
|
| Q |
242 |
gagacaaggaagaaccctctatggtttcggaggttgaagaagacaaagaaga |
293 |
Q |
| |
|
||| || ||||||||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
31825584 |
gaggcagggaagaaccctctatggattcggaggttgatgaagaagaagaaga |
31825533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 21584860 - 21584582
Alignment:
| Q |
6 |
ggaggagcagagaggcataggaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaa |
105 |
Q |
| |
|
||||| ||| |||| || ||||| ||||||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
21584860 |
ggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgttaagagaa |
21584761 |
T |
|
| Q |
106 |
tcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaa |
205 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||| || | ||||| |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
21584760 |
tcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaa |
21584661 |
T |
|
| Q |
206 |
gactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaaga |
284 |
Q |
| |
|
|||||| || || ||||||||||| |||||||||||||| ||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
21584660 |
gactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggattcggaggttgaagaaga |
21584582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 14858670 - 14858629
Alignment:
| Q |
247 |
aaggaagaaccctctatggtttcggaggttgaagaagacaaa |
288 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
14858670 |
aaggaagaaccctctacggttttggtggttgaagaagacaaa |
14858629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 281
Target Start/End: Original strand, 10575327 - 10575581
Alignment:
| Q |
27 |
aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag |
126 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||| ||||| || |||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| | |
|
|
| T |
10575327 |
aaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtgaaaagaatcagtggattgatctatgagg |
10575426 |
T |
|
| Q |
127 |
aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt |
226 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||||| || | ||||| ||||| |||||||||||||| |||||||| ||||| || || |||||||| |
|
|
| T |
10575427 |
aaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgt |
10575526 |
T |
|
| Q |
227 |
tgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaaga |
281 |
Q |
| |
|
||| || || | |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10575527 |
tgtttacgcgcttaagagacaaggaagaaccctctatggtttcggtggttgaaga |
10575581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 276
Target Start/End: Complemental strand, 39955108 - 39954838
Alignment:
| Q |
6 |
ggaggagcagagaggcataggaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaa |
105 |
Q |
| |
|
||||||||| ||||||| || ||||||||||| || |||||||| || || ||||||||||| |||||||| | ||||| | |||||||||||||||| |
|
|
| T |
39955108 |
ggaggagcaaagaggcacagaaaggttcttcgcgacaacatccaaggcataaccaagcctgcgattcgtcgtcttgcaaggcgtggtggtgtgaagagaa |
39955009 |
T |
|
| Q |
106 |
tcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaa |
205 |
Q |
| |
|
|||| ||| | ||||| ||||| || | ||||| | |||||||| | || ||||| ||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
39955008 |
tcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaa |
39954909 |
T |
|
| Q |
206 |
gactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggtt |
276 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||| || ||||| || ||||| |||||||| |||| |
|
|
| T |
39954908 |
aactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt |
39954838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 354338 - 354547
Alignment:
| Q |
21 |
cataggaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttga-tc |
119 |
Q |
| |
|
||||| ||||||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||||||||| ||||||||||| | || |
|
|
| T |
354338 |
catagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatc |
354437 |
T |
|
| Q |
120 |
tatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgcca |
219 |
Q |
| |
|
||||| |||| ||||| || |||||||| |||||| | |||| ||| ||||||| ||||| ||||||||||||||||||||||||||| | || || | |
|
|
| T |
354438 |
tatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcatgcaaggaggaagactctgactgcta |
354537 |
T |
|
| Q |
220 |
tggatgttgt |
229 |
Q |
| |
|
|||||||||| |
|
|
| T |
354538 |
tggatgttgt |
354547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 10580727 - 10580895
Alignment:
| Q |
27 |
aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag |
126 |
Q |
| |
|
||||||||| | | |||||| || || || || ||||| || |||||| ||||||| ||||||| |||||||||||| |||||||||||||||||||| | |
|
|
| T |
10580727 |
aaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagagttggtgtgaagaggatcagtggtttgatctatgagg |
10580826 |
T |
|
| Q |
127 |
aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatg |
195 |
Q |
| |
|
||| ||||| | |||||||| |||||| | ||| |||| |||||| ||||| ||||||||||||| |
|
|
| T |
10580827 |
aaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttacttacactgagcatg |
10580895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 33 - 284
Target Start/End: Complemental strand, 14261268 - 14261017
Alignment:
| Q |
33 |
cttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaagaaacca |
132 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||| || ||||| ||||| || |||||||| ||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
14261268 |
cttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactc |
14261169 |
T |
|
| Q |
133 |
gaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgttgtcta |
232 |
Q |
| |
|
| ||||| |||||||| |||||||| ||||| || | ||||| ||||| || ||||| ||||| ||||||||||| ||||| || ||||||||||| || |
|
|
| T |
14261168 |
gcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgttta |
14261069 |
T |
|
| Q |
233 |
tgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaaga |
284 |
Q |
| |
|
||| ||||||||||||||||| || | |||||||||||||||||||||||| |
|
|
| T |
14261068 |
tgcgttgaagagacaaggaaggactttgtatggtttcggaggttgaagaaga |
14261017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 41027512 - 41027738
Alignment:
| Q |
27 |
aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag |
126 |
Q |
| |
|
||||| |||||||||||||| || || || || |||||||| |||||||| |||||| | ||||| || |||||| | || || ||||||||||| |||| |
|
|
| T |
41027512 |
aaggtgcttcgtgataacattcaaggaattacgaagcctgcgattcgtcgtttggcacgtagaggaggagtgaagcgtataagcggtttgatctacgaag |
41027611 |
T |
|
| Q |
127 |
aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt |
226 |
Q |
| |
|
| || | || || ||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || |||||||| |
|
|
| T |
41027612 |
agacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgt |
41027711 |
T |
|
| Q |
227 |
tgtctatgctttgaagagacaaggaag |
253 |
Q |
| |
|
||| ||||| ||||||||||||||||| |
|
|
| T |
41027712 |
tgtttatgcattgaagagacaaggaag |
41027738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 276
Target Start/End: Original strand, 53328654 - 53328903
Alignment:
| Q |
27 |
aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag |
126 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| |||||||| |||||||| | |||||| | |||||||||||| | |||||||| || |||||||||| |
|
|
| T |
53328654 |
aaggttctgcgcgataacatccagggaatcacaaagcctgcgattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaag |
53328753 |
T |
|
| Q |
127 |
aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt |
226 |
Q |
| |
|
|||| | || || | |||||||| | || ||||| ||||||||||| || |||||||| |||||||| | | ||||||||||| || |||||||| |
|
|
| T |
53328754 |
aaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacatacacagagcatgctcgccgtaagactgttactgcaatggatgt |
53328853 |
T |
|
| Q |
227 |
tgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggtt |
276 |
Q |
| |
|
||| || ||| | ||||| || ||||| || || || |||||||| |||| |
|
|
| T |
53328854 |
tgtttacgctctcaagaggcagggaaggactctttacggtttcgggggtt |
53328903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 259
Target Start/End: Original strand, 22898493 - 22898725
Alignment:
| Q |
27 |
aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag |
126 |
Q |
| |
|
||||| |||||||| ||||||||||| || || ||||| || |||||||| | || | ||||| || |||||| | |||||||||||||| ||||| | |
|
|
| T |
22898493 |
aaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgagg |
22898592 |
T |
|
| Q |
127 |
aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt |
226 |
Q |
| |
|
| || | || || |||||||| || ||||| ||||| ||| | ||||| || || ||||||||||| || || |||||||| ||||| || |||||||| |
|
|
| T |
22898593 |
agacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgt |
22898692 |
T |
|
| Q |
227 |
tgtctatgctttgaagagacaaggaagaaccct |
259 |
Q |
| |
|
|| ||||| | |||||||| ||||||||||| |
|
|
| T |
22898693 |
ggtttatgccctcaagagacagggaagaaccct |
22898725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 259
Target Start/End: Original strand, 22950161 - 22950393
Alignment:
| Q |
27 |
aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag |
126 |
Q |
| |
|
||||| |||||||| ||||||||||| || || ||||| || |||||||| | || | ||||| || |||||| | |||||||||||||| ||||| | |
|
|
| T |
22950161 |
aaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgagg |
22950260 |
T |
|
| Q |
127 |
aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt |
226 |
Q |
| |
|
| || | || || |||||||| || ||||| ||||| ||| | ||||| || || ||||||||||| || || |||||||| ||||| || |||||||| |
|
|
| T |
22950261 |
agacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgt |
22950360 |
T |
|
| Q |
227 |
tgtctatgctttgaagagacaaggaagaaccct |
259 |
Q |
| |
|
|| ||||| | |||||||| ||||||||||| |
|
|
| T |
22950361 |
ggtttatgccctcaagagacagggaagaaccct |
22950393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 268
Target Start/End: Complemental strand, 26358787 - 26358549
Alignment:
| Q |
30 |
gttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaagaaa |
129 |
Q |
| |
|
|||||||| |||||||| ||||| || ||||| || || |||||||| | ||||| | |||||||| || | ||||||||| ||||||||||||||| |
|
|
| T |
26358787 |
gttcttcgagataacattcagggaattaccaaacccgcgattcgtcgtcttgcaaggcgtggtggtgtaaaacgtatcagtggtctgatctatgaagaaa |
26358688 |
T |
|
| Q |
130 |
ccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgttgt |
229 |
Q |
| |
|
| | ||||| | ||||| || | || ||||| ||||||||||| || || |||||||| ||||| | | || || ||||| || ||||||||||| |
|
|
| T |
26358687 |
ctcgtggtgttctcaagatatttcttgagaatgttattcgtgatgctgtcacttacactgaacatgctcgtcgcaaaacagttactgctatggatgttgt |
26358588 |
T |
|
| Q |
230 |
ctatgctttgaagagacaaggaagaaccctctatggttt |
268 |
Q |
| |
|
||||| | ||||| |||||||| ||||| |||||||| |
|
|
| T |
26358587 |
ttatgcgctcaagaggcaaggaaggaccctttatggttt |
26358549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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