View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_63 (Length: 335)
Name: NF11928_low_63
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 9934556 - 9934862
Alignment:
| Q |
14 |
agacactacaattattcactttaaaaaataaattttagtcactagactatctttnnnnnnnncatgataattgataacgaaatttgatcaattgtgtatg |
113 |
Q |
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| T |
9934556 |
agacactacaattatttactttagaaaataaattctagtcactagactatctttcaaaaaaacatgataattgataacgaaatttgatcaattgtgtatg |
9934655 |
T |
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| Q |
114 |
catgagaatatgtagttcctttgtattatttagtaagagatgtgattagagtttaaatatacaacttgtatttgaatattttgcatggtataaattacaa |
213 |
Q |
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| T |
9934656 |
catgagaatatgtagttcctttgtattatttagtaagagatgagattagaatttaaatatacaacttgtatttgaatattttgcatggtttaaattacaa |
9934755 |
T |
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| Q |
214 |
cataacctttgaaccctcatatccttgacaaaaacgtttggaacaaagttcaagaaaatgtgttaccatctccattcattcaactctgcacacttgccag |
313 |
Q |
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| T |
9934756 |
cattacctttgaaccctcatatccttgacaaaaacgtttggaacaaagttcaagaaaatgtgttaccatctccattcattcaactctgcacacttgccag |
9934855 |
T |
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| Q |
314 |
tactatg |
320 |
Q |
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| T |
9934856 |
tactatg |
9934862 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 26958153 - 26958104
Alignment:
| Q |
16 |
acactacaattattcactttaaaaaataaattttagtcactagactatct |
65 |
Q |
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||||| || |||||||||||||||| | |||| ||||||||||||||||| |
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| T |
26958153 |
acactccacttattcactttaaaaattgaattatagtcactagactatct |
26958104 |
T |
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