View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_66 (Length: 329)
Name: NF11928_low_66
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 17455808 - 17455502
Alignment:
| Q |
10 |
agagtcgagataggtactatattatttgtctttatactcaccataaaaatgacttgtatataaataaacaaactgacttgggtaactttaatgtctgtat |
109 |
Q |
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| T |
17455808 |
agagtcgagataggtactatattatttgtctttatactcaccgtaaaaatgacttgtatataaataaacaaactgactaaggtaactttaatgtctgtat |
17455709 |
T |
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| Q |
110 |
ctttgaccactagtttatgcacttcacttttctttcacattttcgacttcaatgttttgcagggaattctcaagaaaagctaagaaagcaaacaatgtat |
209 |
Q |
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| T |
17455708 |
ctttgaccactagtttatgcacttcacttttctttcacattttcgacttcaatgttttacagggaactctcaagaaaagctaagaaagcaaacaatgtat |
17455609 |
T |
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| Q |
210 |
ggtggcacttaagtgggttgcttggggatcaaaatcgcttgctgatgtacatcgttcttcaaggaatatttaccattgtaacaatggcactgactgtccc |
309 |
Q |
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| T |
17455608 |
ggtggcacttaagtgggttgcttggggatcaaaatcgcttgctgatgtacatcgttcttcaaggaatatttaccattgtaacaatggcactgactgtccc |
17455509 |
T |
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| Q |
310 |
catattc |
316 |
Q |
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||||||| |
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| T |
17455508 |
catattc |
17455502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 132 - 322
Target Start/End: Original strand, 17461338 - 17461528
Alignment:
| Q |
132 |
ttcacttttctttcacattttcgacttcaatgttttgcagggaattctcaagaaaagctaagaaagcaaacaatgtatggtggcacttaagtgggttgct |
231 |
Q |
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| T |
17461338 |
ttcacttttctttcacattgttgatttcaaccttttacagggaactctcaaaaaaagctaagaaagcaaacaatgtatggtggcgcttaagtgggttgct |
17461437 |
T |
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| Q |
232 |
tggggatcaaaatcgcttgctgatgtacatcgttcttcaaggaatatttaccattgtaacaatggcactgactgtccccatattcatctca |
322 |
Q |
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| T |
17461438 |
tggggatcaaaatcgcttgctgatgtacatcgttcttcaaagcatatttaccattgcaaccatggcactgactgtccccatattcttctca |
17461528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 154 - 316
Target Start/End: Original strand, 52142793 - 52142955
Alignment:
| Q |
154 |
gacttcaatgttttgcagggaattctcaagaaaagctaagaaagcaaacaatgtatggtggcacttaagtgggttgcttggggatcaaaatcgcttgctg |
253 |
Q |
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| T |
52142793 |
gacttcaatctttcacagggaactctcaaaaaaagctaagaaagcaaacaatatatggtggcgcctaagtgggctatttggggatcaaaatcgcatgcta |
52142892 |
T |
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| Q |
254 |
atgtacatcgttcttcaaggaatatttaccattgtaacaatggcactgactgtccccatattc |
316 |
Q |
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| T |
52142893 |
atgtacatttttctacaaggcatatttaccattgcaaccatggcactggctgtccccatattc |
52142955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 774964 - 774866
Alignment:
| Q |
120 |
tagtttatgcacttcacttttctttcacattttcgacttcaatgttttgcagggaattctcaagaaaagctaagaaagcaaacaatgtatggtggcact |
218 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
774964 |
tagtttatgcacttcacttttctttcacattgttgacttcaatgttttacagggaactctcaagaaaagctaagaaagcaaacaatgtatggtggcact |
774866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 775245 - 775196
Alignment:
| Q |
73 |
ataaacaaactgacttgggtaactttaatgtctgtatctttgaccactag |
122 |
Q |
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|||| ||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
775245 |
ataatcaaactgacttttgtaactttaatgtttgtatctttgaccactag |
775196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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