View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_67 (Length: 326)
Name: NF11928_low_67
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 39798746 - 39799042
Alignment:
| Q |
1 |
atgaaatttatcagtttagttctaaagttttagttctgaagtatatgagaaaattcgtcaatttaatctttattgtatctcaacagtagagactaaattt |
100 |
Q |
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| T |
39798746 |
atgaaatttatcagtttagttctaaagttttagttctgaagtatatgagaaaattcgtcaatttaatctttattgtatctcaacagtagagactaaa--- |
39798842 |
T |
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| Q |
101 |
aaattgaagattttttagggataaattgaagaacattatatattttagggactatttagtatatttatatggtacggagactaaattgaagaggaaatga |
200 |
Q |
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| T |
39798843 |
---ttgaagattttttaaggataaattgaagaacattatatattttagggactatttagtatatttatattacacggagactaaattgaagaggaaatga |
39798939 |
T |
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| Q |
201 |
aaatgatagtttaagaaaataaattgataatttatacctgtataataatttatgcactcttagttagaacacattgtagctgcgagcggttatattacat |
300 |
Q |
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| T |
39798940 |
aaatgatagtttaagaaaataaattgataatttatacctgtataataatttatgaactcttagttagaacacattgtagctgcgagcggttatattacat |
39799039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 16193546 - 16193577
Alignment:
| Q |
136 |
ttatatattttagggactatttagtatattta |
167 |
Q |
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| T |
16193546 |
ttatatattttagggactatttagtatattta |
16193577 |
T |
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