View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_69 (Length: 314)
Name: NF11928_low_69
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 31623882 - 31623587
Alignment:
| Q |
17 |
aaccaccaggtagcacaggtggaggaggattggggactggtccacacacgaattttacaaagctaccaaaa------------gattctgatgatgatga |
104 |
Q |
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| T |
31623882 |
aaccaccaggtagcacaggtggaggaggattggggactggtccacacacgaatattacaaagctaccaaaaaatccaccaaaagattctgatgatgatga |
31623783 |
T |
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| Q |
105 |
agatcaacttgacaacacttttgcattcaatcttactggcaatgagtgggtggtgatttatcttttttcgatcctctttgtaggttcaacattgtttaat |
204 |
Q |
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| T |
31623782 |
agatcaacttgacaacacttttgcattcaatcttactggcaatgagtgggtggtgatttatcttttttcgatcctctttgtaggttcaacattgtttaat |
31623683 |
T |
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| Q |
205 |
gcacattaattaggacttgttttaattaattttttcatgtaattaatggatattgtttttgtattcttatggtggagaatttcagttttctttcat |
300 |
Q |
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| T |
31623682 |
gcacattaattaggagttgttttaattaattttttcatgtaattaatggatattgtttttgtattcttatggtggagaatttcagttttctttcat |
31623587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 91 - 284
Target Start/End: Complemental strand, 31605202 - 31605010
Alignment:
| Q |
91 |
tctgatgatgatgaagatcaacttgacaacacttttgcattcaatcttactggcaatgagtgggtggtgatttatcttttttcgatcctctttgtaggtt |
190 |
Q |
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| T |
31605202 |
tctgatgacgatgaagatcaacttgacaacacttttgcattcaatcttaccagcaatgagtgggtggtggtttttcttcttttgatcctctttgtaggtt |
31605103 |
T |
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| Q |
191 |
caacattgtttaatgcacattaattaggacttgttttaattaattttttcatgtaattaatggatattgtttttgtattcttatggtggagaat |
284 |
Q |
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| T |
31605102 |
caacattgtttaaagcacattaatta-gagttgttttaattaattttctcatgaaattaatggacgttgttttgggattcttattgtggggaat |
31605010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 31619121 - 31618988
Alignment:
| Q |
89 |
attctgatgatgatgaagatcaacttgacaacacttttgcattcaatcttactggcaatgagtgggtggtgatttatcttttttcgatcctctttgtagg |
188 |
Q |
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| T |
31619121 |
attctgatgacgatgaagatcaacttgataacacttttgcattcaatcttactggcaaggagtgggtggtgatttttctttttttgatcctctttgtagg |
31619022 |
T |
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| Q |
189 |
ttcaacattgtttaatgcacattaattaggactt |
222 |
Q |
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| T |
31619021 |
ttcaacattgtttaaagcacattaactaggactt |
31618988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 31608397 - 31608315
Alignment:
| Q |
81 |
accaaaagattctgatgatgatgaagatcaacttgacaacacttttgcattcaatcttactggcaatgagtgggtggtgattt |
163 |
Q |
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| T |
31608397 |
accaaaaaattctgatgatgatgaagatcaacttgacaacacttctgcattcaatcttactggcaatgagtgagtggtgattt |
31608315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 31612826 - 31612758
Alignment:
| Q |
205 |
gcacattaattaggacttgttttaattaattttttcatgtaattaatggatattgtttttgtattctta |
273 |
Q |
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| T |
31612826 |
gcacattaattaggatttgttttaattaattttctcatgaaattaatggatattgttttggcattctta |
31612758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 31607398 - 31607282
Alignment:
| Q |
175 |
atcctctttgtaggttcaacattgtttaatgcacattaattaggacttgttttaattaattttttcatgtaattaatggatattgtttttgtattcttat |
274 |
Q |
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| T |
31607398 |
atcctctttgtaggtttgacattgtttaaagcacattaattagaagttgatttaattaa--atgtcattaaattagtggatattgttttggcgttcttat |
31607301 |
T |
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| Q |
275 |
ggtggagaatttcagtttt |
293 |
Q |
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| T |
31607300 |
tgttgggaatttaagtttt |
31607282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 31612933 - 31612895
Alignment:
| Q |
81 |
accaaaagattctgatgatgatgaagatcaacttgacaa |
119 |
Q |
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| T |
31612933 |
accaaaaaattctgatgatgatgaagatcaacttgacaa |
31612895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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