View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_7 (Length: 768)
Name: NF11928_low_7
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 414 - 753
Target Start/End: Original strand, 37484029 - 37484372
Alignment:
| Q |
414 |
agcaatcttcaacatgcaaattttcaaaaaattaataaattaagaaatctatatagttaactaaatcgttattgaaaattgatgataaatgataattgaa |
513 |
Q |
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| T |
37484029 |
agcaatcttcaacatgcaaattttcaaaaaattaataaattaagaaatctatatagttaactaaatcgttattgaaaattgatgataaatgataattgaa |
37484128 |
T |
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| Q |
514 |
aatgtggatccagaaaagtgggagaaagataaacctaaccaaatggaattgaattgaatcgattagcgtagcgatgagtgtggatctgtgcggaaaaggg |
613 |
Q |
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| T |
37484129 |
aatgtggatccagaaaagtgggagaaagataaacctaacctgatggaattgaattgaatcgattagcgtagcgatgagtgtggatctgtgcggaaagggg |
37484228 |
T |
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| Q |
614 |
ttgagtagaacgcacacatgaaatgaagatcaaagtatcaaatgcgttgtattctattttcaactgtctgaaaagaggacagcctttacgcaatgcagtg |
713 |
Q |
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| T |
37484229 |
ttgagtagaacgcacacatgaaatgaagatcaaagtatcaaatgcgttgtattctattttcaactgtctgaaaagagaacagcctttacgcaatgcagtg |
37484328 |
T |
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| Q |
714 |
ttttactcaagtag----tgtatgtatgcgtcgcatgtaagaat |
753 |
Q |
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| T |
37484329 |
ttttactcaagtagtgtatgtatgtatgcgtcgcatgtaagaat |
37484372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 218 - 382
Target Start/End: Original strand, 37483843 - 37484006
Alignment:
| Q |
218 |
cactataattgcggaaactagaatcatgaataacactataattgcggaaacttaaataataccaagatcataaacaacaggtctacttccagatttgcgt |
317 |
Q |
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| T |
37483843 |
cactataattgcggaaactagaatcatgaataacactataatt-cggaaacttaaataataccaagatcataaacaacaggtctacttccagatttgcgt |
37483941 |
T |
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| Q |
318 |
aagtgaggactattagcaggaacagcaaacattaataacacaatcaactatatcgattgttttta |
382 |
Q |
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| T |
37483942 |
aagtgaggactattagcaggaacagcaaacattaataacacaatcaactatatcgattgatttta |
37484006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 37483643 - 37483804
Alignment:
| Q |
16 |
agcacagaccataaactctatcagtcaaacaccaaaaacaaatacaatttaagtctctgcgcaattatagagtgttttggttttagtccctgtaagnnnn |
115 |
Q |
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| T |
37483643 |
agcacagaccataaactctatcaatcaaacaccaaaaacaaatacaatttaagtctctgc--aattatagagtgttttggttttagtccctgtaagtttt |
37483740 |
T |
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| Q |
116 |
nnngtttcaactcagtccctgcaaatttaaaacaagagtttttgaatttgcaggaaccgaatac |
179 |
Q |
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| T |
37483741 |
tttgtttcaactcagtccctgcaaatttaaaacaagagtttttgaatttgcaggaaccgaatac |
37483804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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