View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_70 (Length: 313)

Name: NF11928_low_70
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_70
NF11928_low_70
[»] chr8 (4 HSPs)
chr8 (1-234)||(9677620-9677853)
chr8 (1-230)||(9693361-9693590)
chr8 (253-296)||(9677870-9677913)
chr8 (122-167)||(30652024-30652069)
[»] chr4 (5 HSPs)
chr4 (1-215)||(35160435-35160649)
chr4 (3-215)||(35154044-35154256)
chr4 (4-169)||(15555032-15555197)
chr4 (3-130)||(37147414-37147541)
chr4 (122-167)||(16298996-16299041)
[»] chr3 (12 HSPs)
chr3 (11-172)||(46469649-46469810)
chr3 (17-172)||(5155227-5155382)
chr3 (10-169)||(46478252-46478411)
chr3 (12-190)||(4582493-4582671)
chr3 (1-97)||(47398298-47398394)
chr3 (12-170)||(16023908-16024066)
chr3 (99-188)||(51942045-51942134)
chr3 (10-94)||(46507113-46507197)
chr3 (5-115)||(46490048-46490158)
chr3 (1-86)||(47414942-47415027)
chr3 (5-112)||(46497368-46497475)
chr3 (15-115)||(45900912-45901012)
[»] chr6 (1 HSPs)
chr6 (16-167)||(16967863-16968014)
[»] chr2 (4 HSPs)
chr2 (44-172)||(20154383-20154511)
chr2 (11-150)||(20143500-20143639)
chr2 (5-150)||(20169865-20170010)
chr2 (122-167)||(39548117-39548162)
[»] chr1 (1 HSPs)
chr1 (122-167)||(33097480-33097525)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 9677620 - 9677853
Alignment:
Q  1 gatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatact 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9677620 gatgagagacgaaggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatact 9677719  T
Q  101 gagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttcgcattgttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  9677720 gagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggcgaccgtgagggaaactttcgcatggttg 9677819  T
Q  201 gtgcttgattgatcaaggtgagccattgtttgtt 234  Q
    ||||||||||||||||||||||||||||||||||    
T  9677820 gtgcttgattgatcaaggtgagccattgtttgtt 9677853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9693361 - 9693590
Alignment:
Q  1 gatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatact 100  Q
    |||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||    
T  9693361 gatgagagacaaagaagttgagatgatcgatggatttgaaacggaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgct 9693460  T
Q  101 gagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttcgcattgttg 200  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |  |||||||||| |||||| | ||||    
T  9693461 gagaacaacttggagagacaatggtgaaaagacgacattcttgtctgattcttttgagaagagatgtttggcgatggtgagggaaaatttcgcttggttg 9693560  T
Q  201 gtgcttgattgatcaaggtgagccattgtt 230  Q
    |||||||||| |||||||||||||||||||    
T  9693561 gtgcttgattcatcaaggtgagccattgtt 9693590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 9677870 - 9677913
Alignment:
Q  253 gcgaaccattgtttgttaatttccttcttttgatttttcaactg 296  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  9677870 gcgaaccattgtttgttaatttccttcttttgattttccaactg 9677913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 30652069 - 30652024
Alignment:
Q  122 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 167  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  30652069 tggtgaaaacacgatgttgttgtctgattctttggagaagagatgt 30652024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 35160649 - 35160435
Alignment:
Q  1 gatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatact 100  Q
    ||||||||||  ||||||||||||||||  |||||||||| ||||||||||| |||||||||||||| || | ||||||||||||| ||| ||| || ||    
T  35160649 gatgagagactgaggagttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgct 35160550  T
Q  101 gagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttcgcattgttg 200  Q
    ||| |||||||||||||||||||| ||||| |||| ||| || ||||||||||| ||||||||||||||| | |  ||||| ||||||||||  | ||||    
T  35160549 gagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggttg 35160450  T
Q  201 gtgcttgattgatca 215  Q
     ||||||||| ||||    
T  35160449 ttgcttgattcatca 35160435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 35154256 - 35154044
Alignment:
Q  3 tgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactga 102  Q
    ||||||||||||||||||||||||| |  |||||||||  ||||||||| ||||||||||||| | || | ||| ||||||||| ||||||||||    |    
T  35154256 tgagagacgaaggagttgagatgataggcggatttgaattggaggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatgattgcaa 35154157  T
Q  103 gaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttcgcattgttggt 202  Q
    | || |||||||||||||| || ||||| ||||  || || |||||||| |||||||| ||||||||||| |  |||||||||||||||| || ||||      
T  35154156 gcactacttggagagacaaaggcgaaaacacgatattcttttctgattcctttgagaaaagatgtttggcgatagtgagggaaactttcgtatggttgca 35154057  T
Q  203 gcttgattgatca 215  Q
    |||||||| ||||    
T  35154056 gcttgattcatca 35154044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 15555197 - 15555032
Alignment:
Q  4 gagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgag 103  Q
    |||||| || ||||||||| |||| ||||||||| || ||||||||||||||||| ||||| || || | ||||||||||||| |||||||||| |||||    
T  15555197 gagagatgacggagttgagttgatggatggatttaaagcggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgag 15555098  T
Q  104 aacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgttt 169  Q
    || |||||| |  || |  |||||||| || | ||||||||  | || ||| ||||||||||||||    
T  15555097 aataacttgaatcgagagaggtgaaaacacaatgttgttgttgggttgtttagagaagagatgttt 15555032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 37147541 - 37147414
Alignment:
Q  3 tgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactga 102  Q
    ||||| |||||  |||||| ||||| ||||||||| ||   ||||||||||||||  |||||||| || |||||||  |||||| ||||||| ||||| |    
T  37147541 tgagaaacgaataagttgacatgattgatggatttaaagtcgaggaagtcgagaatttgttgttgtgtgggacccttggagccagcagcgataatactta 37147442  T
Q  103 gaacaacttggagagacaatggtgaaaa 130  Q
    ||||||||||||| ||||| || |||||    
T  37147441 gaacaacttggagcgacaagggcgaaaa 37147414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 16299041 - 16298996
Alignment:
Q  122 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 167  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  16299041 tggtgaaaacacgatgttgttgtctgattctttggagaagagatgt 16298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 46469810 - 46469649
Alignment:
Q  11 gaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaact 110  Q
    ||||||||||||||| |||||||||||| | |||||||| |||||||| |||||||| ||| ||||||||||| || ||||||  ||  |||| | ||||    
T  46469810 gaaggagttgagatggtcgatggatttggaacggaggaattcgagaagttgttgttgtgtacgaccctcagaggcagcagcgacaatgttgagcataact 46469711  T
Q  111 tggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggc 172  Q
    ||||| ||||  || ||||| || ||||| ||||||||||||||||||||||||||||||||    
T  46469710 tggagtgacagcggcgaaaacacaacgttcttgtctgattcttttgagaagagatgtttggc 46469649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 5155382 - 5155227
Alignment:
Q  17 gttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttggaga 116  Q
    ||||||||| ||  |||||||| || ||||||||||||||||||||||||| || ||||||||||||||| |||||||||| || || |||||||| |||    
T  5155382 gttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 5155283  T
Q  117 gacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggc 172  Q
    |||| ||| ||||| || | ||| |||||| |||||||  |||| |||||||||||    
T  5155282 gacagtggcgaaaacacaatgttcttgtctaattctttcaagaacagatgtttggc 5155227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 46478411 - 46478252
Alignment:
Q  10 cgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaac 109  Q
    ||||| |||||||||||||| |||||||| |  | ||||||| || ||| ||||||||||| ||||||||||| |||  |||||| ||||| || |||||    
T  46478411 cgaagtagttgagatgatcggtggatttggattgaaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgattatacttagcacaac 46478312  T
Q  110 ttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgttt 169  Q
    |||||| || | ||| ||||| |||| |||||||||||||||||| ||||||||||||||    
T  46478311 ttggagtgaaagtggagaaaacacgatgttgttgtctgattctttggagaagagatgttt 46478252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 4582493 - 4582671
Alignment:
Q  12 aaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaactt 111  Q
    |||||||||||||||||  | |||||| |  | ||||||||||||||||||| |   || || || ||||||||| ||||||| || |||||  ||||||    
T  4582493 aaggagttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaactt 4582592  T
Q  112 ggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaacttt 190  Q
    |||| || | ||| ||||| || | ||| || |||||||||||||||||||||| |||||| |   |||||||||||||    
T  4582593 ggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttt 4582671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 47398298 - 47398394
Alignment:
Q  1 gatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgat 97  Q
    |||||||| |||||||||||||||| ||  |||| ||| |||  |||||||||||||||| |||||| || ||||||||||||||| ||||| ||||    
T  47398298 gatgagaggcgaaggagttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcgttgat 47398394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 16024066 - 16023908
Alignment:
Q  12 aaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaactt 111  Q
    ||||||||||||| || | | |||| | | |||||||||| ||||||||||||||| || || ||||| || ||| ||||||| |  |||||||||||||    
T  16024066 aaggagttgagattattggtagattcggagcggaggaagtggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaactt 16023967  T
Q  112 ggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttg 170  Q
    | || || |  || ||||| | || ||| |||||||||| |||||| ||||||||||||    
T  16023966 gaagtgatagcggagaaaacatgatgttattgtctgattgttttgaaaagagatgtttg 16023908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 51942134 - 51942045
Alignment:
Q  99 ctgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaact 188  Q
    ||||| |||||||| ||||||||||| |||||||||| |||||| ||||||| ||||||||| | ||||||||| |   |||||||||||    
T  51942134 ctgagcacaacttgcagagacaatggcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaact 51942045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 46507113 - 46507197
Alignment:
Q  10 cgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgat 94  Q
    |||| ||||||||||||| ||| |||||| | | ||||||||| |||| |||||||||||| ||||||||||||||  |||||||    
T  46507113 cgaatgagttgagatgatggatagatttggagcagaggaagtcaagaatctgttgttgagtgggaccctcagagccggcagcgat 46507197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 46490158 - 46490048
Alignment:
Q  5 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 104  Q
    |||| |||| |||||||| |||||| |||| ||  |  |||||||||| |||||||||||||| || |  || ||||||||| |||||||||| |||||     
T  46490158 agaggcgaatgagttgagttgatcggtggagttagattggaggaagtcaagaagctgttgttgtgtggagccgtcagagccagcagcgatgatgctgagt 46490059  T
Q  105 acaacttggag 115  Q
    |||||||||||    
T  46490058 acaacttggag 46490048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 47414942 - 47415027
Alignment:
Q  1 gatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagcca 86  Q
    |||||||| | ||||||||||||||||| ||||||||  | | ||||||||||||||||| ||| || || | |||||||||||||    
T  47414942 gatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtggtaccctcagagcca 47415027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 46497475 - 46497368
Alignment:
Q  5 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 104  Q
    |||| ||||||||||||| |||| | |||||||| |  ||||||||| |||||| |||||||| || || ||||| ||||||  ||||||||| || ||     
T  46497475 agaggcgaaggagttgagttgataggtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgatgatgcttagc 46497376  T
Q  105 acaacttg 112  Q
    ||||||||    
T  46497375 acaacttg 46497368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 45901012 - 45900912
Alignment:
Q  15 gagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttgga 114  Q
    ||||||||||| ||| ||||||  ||  ||||||||| || |||||| ||||| || ||||||||||  ||| |||| ||||| ||||||| ||||||||    
T  45901012 gagttgagatggtcggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttgga 45900913  T
Q  115 g 115  Q
    |    
T  45900912 g 45900912  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 16967863 - 16968014
Alignment:
Q  16 agttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttggag 115  Q
    ||||||||||||||||||||||| |  ||||||| | || ||| ||||||||||| ||||||||||| |||| |||||| || || |  |||||||||||    
T  16967863 agttgagatgatcgatggatttggattggaggaatttgaaaagttgttgttgagtgggaccctcagaaccaaaagcgattatgcttaacacaacttggag 16967962  T
Q  116 agacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 167  Q
     || | ||||||||| |||| ||||||||| |||||||| ||||| ||||||    
T  16967963 tgagagtggtgaaaacacgatgttgttgtccgattctttggagaatagatgt 16968014  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 20154511 - 20154383
Alignment:
Q  44 gaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgttg 143  Q
    ||||||||||| |||||||||||| || ||||| ||||||||| ||||| |||  ||||  ||||||||||| |||| ||| ||||| || | ||| |||    
T  20154511 gaggaagtcgacaagctgttgttgtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttg 20154412  T
Q  144 tctgattcttttgagaagagatgtttggc 172  Q
    ||||||| |||  |||| |||||||||||    
T  20154411 tctgattgtttcaagaacagatgtttggc 20154383  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 20143639 - 20143500
Alignment:
Q  11 gaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaact 110  Q
    ||||||||| ||||||| | |||||||||| ||||||||||||| ||| |||||||| || ||| | ||||| ||| ||||||| |  ||||| |||| |    
T  20143639 gaaggagttaagatgattggtggatttgaagcggaggaagtcgacaagttgttgttgtgtgggatcttcagaaccagcagcgataaggctgagcacaatt 20143540  T
Q  111 tggagagacaatggtgaaaagacgacgttgttgtctgatt 150  Q
    ||||| || | ||| ||||| |||| ||| ||||||||||    
T  20143539 tggagtgatagtggcgaaaacacgatgttcttgtctgatt 20143500  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 20169865 - 20170010
Alignment:
Q  5 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 104  Q
    |||| ||||||| |||||||||| | |||||||||| ||||||||||||| ||| |||||||  || ||||| ||||| |||  ||| || |  |||||     
T  20169865 agaggcgaaggaattgagatgattggtggatttgaaacggaggaagtcgacaagttgttgttttgtgggaccttcagaaccagtagcaataaggctgagc 20169964  T
Q  105 acaacttggagagacaatggtgaaaagacgacgttgttgtctgatt 150  Q
    |||| ||| || || | ||||||||| |||||||| ||||||||||    
T  20169965 acaatttgaagtgatagtggtgaaaacacgacgtttttgtctgatt 20170010  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 39548162 - 39548117
Alignment:
Q  122 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 167  Q
    ||||||||| | || |||||||||||||||||| ||||||||||||    
T  39548162 tggtgaaaacatgatgttgttgtctgattctttggagaagagatgt 39548117  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 33097525 - 33097480
Alignment:
Q  122 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 167  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  33097525 tggtgaaaacacgatgttgttgtctgattctttggagaagagatgt 33097480  T

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