View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_72 (Length: 300)
Name: NF11928_low_72
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 132 - 263
Target Start/End: Original strand, 44667719 - 44667840
Alignment:
| Q |
132 |
atatcttccattaagcaatctcacctacacccacctctatatatctatacaactcttcttcctttctaatcaagtcaactcaactcaattcaatccttct |
231 |
Q |
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| T |
44667719 |
atatctcccattaagcaatctcacctacacccacctctatatatctatacaactcttcttcctttct----------agtcaactcaattcaatccttct |
44667808 |
T |
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| Q |
232 |
ttttcttcaacaaatgacttctctctcacagg |
263 |
Q |
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| T |
44667809 |
ttttcttcaacaaatgacttctctttcacagg |
44667840 |
T |
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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 44667602 - 44667680
Alignment:
| Q |
17 |
aacatccaccaccaattaactactgccattatttttcttatatcccctcatcactcaccacactctacaatttatcatt |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44667602 |
aacatccaccaccaattaactactgccattatttttcttttatcccctcatcactcaccacactctacaatttatcatt |
44667680 |
T |
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