View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_74 (Length: 296)
Name: NF11928_low_74
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 21575533 - 21575747
Alignment:
| Q |
15 |
atgaacaaagatatacaaagaaagtgtcatcactgcaataatttgaaaacttgaacaaagatcaagttggtgagatttttaagtcatggttcaactgatt |
114 |
Q |
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| T |
21575533 |
atgaacaaagatatacaaacaaagtatcatcactgcaatgatttgaaaacctgaacaaagatcgagttggtgagatttttaagtcatggttcaactgatt |
21575632 |
T |
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| Q |
115 |
caatcacggttaaaaagtaggaaaacaatcggttgaaccaacccgtttcccctttcaatcgattgaaccgattctttcaaattt-ttaaacattgcatca |
213 |
Q |
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| T |
21575633 |
caatcacggttaaaaagtagtaaaacaatcggttgaaccaacccgtttcccctttcaatcgattgaaccgattctttcaaatttctaaaacattgcatca |
21575732 |
T |
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| Q |
214 |
atacaatgaaagtac |
228 |
Q |
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| T |
21575733 |
atacaatgaaagtac |
21575747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 21575257 - 21575329
Alignment:
| Q |
37 |
agtgtcatcactgcaataatttgaaaacttgaacaaagatcaagttggtgagatttttaagtcatggttcaac |
109 |
Q |
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||||||||||||||||| ||||| |||| |||||||| ||| | || |||||||||| |||||||||||||| |
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| T |
21575257 |
agtgtcatcactgcaatgatttggaaacctgaacaaatatcgaattagtgagattttcgagtcatggttcaac |
21575329 |
T |
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