View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11928_low_80 (Length: 275)
Name: NF11928_low_80
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_80 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 48998767 - 48998511
Alignment:
| Q |
18 |
gtattgaattggacagattcacctgaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctgatagacaagtcatgattg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48998767 |
gtattgaattggacagattcacctgaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctgatagacaagccatgattg |
48998668 |
T |
|
| Q |
118 |
aggcagggattgtatcgtcattgcttgagttgacgcttgtgggtacagccttggcgcagaaaagggcatccagaatactgcaatgtttcaggctagataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48998667 |
aggcagggattgtatcgtcattgcttgagttgacgcttgtgggtacagccttggcgcagaaaagggcatccagaatactgcaatgtttcaggctagataa |
48998568 |
T |
|
| Q |
218 |
agggaagcaggtttctaggagctgtgatggtggaaacttaggtttaactgtctctgc |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48998567 |
agggaagcaggtttctaggagctgtgatggtggaaacttaggtttaactgtctctgc |
48998511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 42563939 - 42564055
Alignment:
| Q |
31 |
cagattcacctgaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctgatagacaagtcatgattgaggcagggattgt |
130 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||| |||| |||||| |||| ||| |||||||||| |||| | |
|
|
| T |
42563939 |
cagattcacctaaatgtcaagagaatatttcatatattttgatgattatggcacgcaaagcttatgatgataggcaagccataattgaggcagagattat |
42564038 |
T |
|
| Q |
131 |
atcgtcattgcttgagt |
147 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
42564039 |
atcgttgttgcttgagt |
42564055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 2984894 - 2985108
Alignment:
| Q |
18 |
gtattgaattggacagattcacctgaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctgatagacaagtcatgattg |
117 |
Q |
| |
|
||||||||||||| |||||||||||||| || || |||| ||| || ||||||||| ||||| | |||||| | |||| ||| | || | |||||| | |
|
|
| T |
2984894 |
gtattgaattggaatgattcacctgaatgccaggaaaaggtttcgtatattttgatggttatgtcgcataaatcttatggtgacaagcaggccatgatag |
2984993 |
T |
|
| Q |
118 |
aggcagggattgtatcgtcattgcttgagttgacgcttgtgggtacagccttggcgcagaaaagggcatccagaatactgcaatgtttcaggctagataa |
217 |
Q |
| |
|
||||||||||||| ||||| | ||||||||| ||||| | ||||| | ||| | |||||| ||||||| || || || || |||| || ||||||| |
|
|
| T |
2984994 |
aggcagggattgtgtcgtcgcttcttgagttgtcgcttattggtactactttgactcagaaacgggcatcaaggctattggaaagtttgagaatagataa |
2985093 |
T |
|
| Q |
218 |
agggaagcaggtttc |
232 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
2985094 |
agggaaacaggtttc |
2985108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University