View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_85 (Length: 264)
Name: NF11928_low_85
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_85 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 42935783 - 42935553
Alignment:
| Q |
23 |
agcatcactgtagaaaacgcatcctcaaagctcaaaattgtcacctatcagcttcttcaatacaaaagttgttatggtcgcacataatggaagggatgcg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42935783 |
agcatcactgtagaaaacgcatcctcaaagctcaaaattgtcacctatcagcttcttcaatacaaaagttgttatggtcgcacataatggaagggaaacg |
42935684 |
T |
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| Q |
123 |
gtcgtaacagctccataacttcatgttttgcagtttttcttttggcacttgagtggtccttgtgtaatggtcatttactcttttactacttatgtatttg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42935683 |
gtcgtaacagctccataacttcatgttttgcagtttttcttttggcacttgagtggtccttgtgtaatggtcatttactcttttactacttatgtatttg |
42935584 |
T |
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| Q |
223 |
cacgtatattgtaatgcttagacttgccttt |
253 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42935583 |
cacgtatattgtaatgcttagacttgccttt |
42935553 |
T |
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