View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_87 (Length: 260)

Name: NF11928_low_87
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_87
NF11928_low_87
[»] chr5 (8 HSPs)
chr5 (9-244)||(41224964-41225199)
chr5 (58-149)||(37611186-37611278)
chr5 (58-149)||(37787916-37788008)
chr5 (76-150)||(17258873-17258947)
chr5 (86-149)||(7674655-7674718)
chr5 (50-79)||(5525203-5525232)
chr5 (50-118)||(37968916-37968984)
chr5 (91-147)||(7984978-7985034)
[»] chr4 (7 HSPs)
chr4 (70-150)||(7693994-7694074)
chr4 (56-149)||(50742805-50742899)
chr4 (88-129)||(55084483-55084524)
chr4 (19-103)||(7367984-7368071)
chr4 (86-150)||(27721723-27721787)
chr4 (56-149)||(29263377-29263472)
chr4 (58-125)||(48719362-48719430)
[»] chr8 (11 HSPs)
chr8 (18-147)||(10075482-10075612)
chr8 (50-150)||(11569420-11569521)
chr8 (86-150)||(20672756-20672820)
chr8 (80-150)||(35220717-35220787)
chr8 (51-150)||(30389105-30389205)
chr8 (88-150)||(11415160-11415222)
chr8 (50-150)||(9700007-9700108)
chr8 (86-139)||(40279655-40279708)
chr8 (96-132)||(12972882-12972918)
chr8 (39-117)||(21130653-21130730)
chr8 (76-120)||(43052716-43052760)
[»] chr2 (10 HSPs)
chr2 (50-150)||(5759538-5759639)
chr2 (55-120)||(1494414-1494480)
chr2 (86-150)||(19333325-19333389)
chr2 (86-147)||(7103482-7103543)
chr2 (57-149)||(15120190-15120283)
chr2 (96-149)||(19629370-19629423)
chr2 (86-131)||(27237893-27237938)
chr2 (58-121)||(4350725-4350789)
chr2 (50-149)||(6993687-6993787)
chr2 (86-150)||(10567063-10567127)
[»] chr6 (3 HSPs)
chr6 (88-139)||(28641751-28641802)
chr6 (60-120)||(821835-821896)
chr6 (86-147)||(4420652-4420713)
[»] chr3 (5 HSPs)
chr3 (86-151)||(3044259-3044324)
chr3 (56-131)||(21574515-21574591)
chr3 (86-149)||(24785212-24785275)
chr3 (86-150)||(20669178-20669242)
chr3 (86-150)||(54180780-54180844)
[»] chr1 (13 HSPs)
chr1 (86-131)||(4622118-4622163)
chr1 (86-147)||(6292502-6292563)
chr1 (66-150)||(11639395-11639480)
chr1 (86-150)||(1565535-1565599)
chr1 (86-146)||(37593684-37593744)
chr1 (54-120)||(4481966-4482033)
chr1 (76-147)||(10199398-10199469)
chr1 (67-149)||(25479588-25479671)
chr1 (56-141)||(44422714-44422800)
chr1 (86-147)||(7262518-7262579)
chr1 (49-120)||(11941298-11941371)
chr1 (86-131)||(31517740-31517785)
chr1 (93-150)||(45975696-45975753)
[»] scaffold0608 (1 HSPs)
scaffold0608 (54-120)||(9604-9671)
[»] chr7 (5 HSPs)
chr7 (56-131)||(39907965-39908040)
chr7 (50-150)||(20526452-20526554)
chr7 (58-150)||(7244686-7244779)
chr7 (58-117)||(36598327-36598387)
chr7 (109-149)||(39505963-39506003)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 41225199 - 41224964
Alignment:
Q  9 aatgagatgaacttatttgagtttatgtacacataaatgcatgtgatactgtttgagagagcttatgaaatagtttgtgacatgttcataagctggtttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41225199 aatgagatgaacttatttgagtttatgtacacataaatgcatgtgatactgtttgagaaagcttatgaaatagtttgtgacatgttcataagctggtttt 41225100  T
Q  109 agcttattttcacaaactctccagaatagcttaagaaaacaggacataaattatagcaataacttctacatgataagtgcttatgataaaagcacttaaa 208  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  41225099 agcttattttcacaaactctgcagaatagcttaagaaaacaggacataaattatagtaataacttctacatgataagtgcttatgataaaaacacttaaa 41225000  T
Q  209 aaagttatttatcaaaacaggactcaataccagttg 244  Q
     |||||||||||||||||||||||||||||||||||    
T  41224999 gaagttatttatcaaaacaggactcaataccagttg 41224964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 37611186 - 37611278
Alignment:
Q  58 tgtttgagagagcttatgaaat-agtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaaca 149  Q
    |||||||||||||||||||||  |  ||||||||||||||||||||| ||| || |||||| || || |||||||  |||||||| |||||||    
T  37611186 tgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaaca 37611278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 37787916 - 37788008
Alignment:
Q  58 tgtttgagagagcttatgaaat-agtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaaca 149  Q
    |||||||||||||||||||||  |  ||||||||||||||||||||| ||| || |||||| || || |||||||  |||||||| |||||||    
T  37787916 tgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaaca 37788008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 17258873 - 17258947
Alignment:
Q  76 aaatagtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    |||||| || |||||||||||||||||| ||| |||||||||||| || |||| ||| |||| ||| ||||||||    
T  17258873 aaatagcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaacag 17258947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 7674718 - 7674655
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaaca 149  Q
    ||||||||| ||||| || ||| |||||||||||||||| ||||||  |||||||| |||||||    
T  7674718 tgacatgtttataaggtgttttcagcttattttcacaaattctccaagatagcttatgaaaaca 7674655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 5525232 - 5525203
Alignment:
Q  50 tgtgatactgtttgagagagcttatgaaat 79  Q
    ||||||||||||||||||||||||||||||    
T  5525232 tgtgatactgtttgagagagcttatgaaat 5525203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 37968984 - 37968916
Alignment:
Q  50 tgtgatactgtttgagagagcttatgaaa-tagtttgtgacatgttcataagctggttttagcttatttt 118  Q
    ||||| ||||||||||||| ||||||||| ||| || | |||||| ||||||||| ||||||||||||||    
T  37968984 tgtgaaactgtttgagagatcttatgaaaatagatt-taacatgtccataagctgtttttagcttatttt 37968916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 7985034 - 7984978
Alignment:
Q  91 tgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaa 147  Q
    ||||||||||||| ||| |||||||||||| ||| ||||||  |||||||| |||||    
T  7985034 tgttcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaa 7984978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 7693994 - 7694074
Alignment:
Q  70 cttatgaaatagtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    ||||||||||||||  ||||||||||||||| || ||| ||||||||| || ||||||||||| ||| |||| ||||||||    
T  7693994 cttatgaaatagttaatgacatgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacag 7694074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 50742805 - 50742899
Alignment:
Q  56 actgtttgagagagcttatgaaat-agtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaaca 149  Q
    ||||||||||||| |||||||||  ||||  |||||||||||||  ||| ||| | || ||||||| || |||||||| |||||||| |||||||    
T  50742805 actgtttgagagaacttatgaaaacagttcatgacatgttcataccctgttttcaactcattttcataagctctccaggatagcttatgaaaaca 50742899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 55084483 - 55084524
Alignment:
Q  88 acatgttcataagctggttttagcttattttcacaaactctc 129  Q
    |||||||||||||||||||| |||||||||||| || |||||    
T  55084483 acatgttcataagctggtttcagcttattttcataagctctc 55084524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 7367984 - 7368071
Alignment:
Q  19 acttatttgagtttatgtaca--cataaatgcatgtgatactgtttgagagagcttatg-aaatagtttgtgacatgttcataagctg 103  Q
    |||||||||||||||| ||||  |||||| || ||||| |||||||| ||||||| ||| ||| || || ||||||||| ||||||||    
T  7367984 acttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagctcatgaaaacagcttatgacatgtttataagctg 7368071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 27721787 - 27721723
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    |||||| | ||||||||| ||| ||||||||||| ||| |||||||| ||| |||| ||||||||    
T  27721787 tgacatatccataagctgttttcagcttattttcgcaagctctccaggataacttatgaaaacag 27721723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 29263472 - 29263377
Alignment:
Q  56 actgtttgagagagctta--tgaaatagtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaaca 149  Q
    |||| ||| |||||||||  ||||| || || ||| ||||||||||| || ||| ||||||||| ||||| |||| ||| |||||||| |||||||    
T  29263472 actgcttgggagagcttaattgaaacagcttatgatatgttcataagttgttttcagcttatttccacaagctctgcaggatagcttatgaaaaca 29263377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 48719362 - 48719430
Alignment:
Q  58 tgtttgagagagcttatgaaa-tagtttgtgacatgttcataagctggttttagcttattttcacaaac 125  Q
    |||||||| || ||||||||| | |||| |||||||||| ||||||| ||| |||||||||||| ||||    
T  48719362 tgtttgagggaacttatgaaaatggtttatgacatgttcgtaagctgttttcagcttattttcataaac 48719430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 10075482 - 10075612
Alignment:
Q  18 aacttatttgagtttatgtaca--cataaatgcatgtgatactgtttgagagagcttatg-aaatagtttgtgacatgttcataagctggttttagctta 114  Q
    ||||||||||||||||| |||   ||||||| | || || ||||||| |||||||||||| |||| |||||  ||||||| | |||||| ||||||||||    
T  10075482 aacttatttgagtttatctactggcataaatacttgcgagactgtttaagagagcttatggaaattgtttg--acatgttgacaagctgcttttagctta 10075579  T
Q  115 ttttcacaaactctccagaatagcttaagaaaa 147  Q
    |||||| || ||||| || |||||||| |||||    
T  10075580 ttttcataagctctctaggatagcttatgaaaa 10075612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 11569420 - 11569521
Alignment:
Q  50 tgtgatactgtttgagagagcttatg-aaatagtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaac 148  Q
    ||||| ||||||| |||||||||||| ||| || || |||||||| |||||| || ||| |||||||||||| || |||||||  |||||||| ||||||    
T  11569420 tgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaac 11569519  T
Q  149 ag 150  Q
    ||    
T  11569520 ag 11569521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 20672820 - 20672756
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    |||||||||||||||||| ||| |||||||||||| || |||||||| ||||||||  |||||||    
T  20672820 tgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaacag 20672756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 35220717 - 35220787
Alignment:
Q  80 agtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    ||||| |||||||  ||||||||  |||||||||||||| | || ||||||||||||||||| ||||||||    
T  35220717 agtttatgacatgcccataagctatttttagcttatttttataagctctccagaatagcttatgaaaacag 35220787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 30389205 - 30389105
Alignment:
Q  51 gtgatactgtttgagagagcttatgaaa-tagtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaaca 149  Q
    |||| ||||||||||||||| ||||||| ||| |  ||||||||||||||| || ||| |||||||||||| ||  |||| || | |||||| |||||||    
T  30389205 gtgacactgtttgagagagcatatgaaaatagctaatgacatgttcataagttgttttcagcttattttcataagttctctaggaaagcttatgaaaaca 30389106  T
Q  150 g 150  Q
    |    
T  30389105 g 30389105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 11415222 - 11415160
Alignment:
Q  88 acatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    |||||| ||||||||  | | ||||||||||||||||||||| || |||||||| ||||||||    
T  11415222 acatgtccataagctattctcagcttattttcacaaactctctaggatagcttatgaaaacag 11415160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 9700108 - 9700007
Alignment:
Q  50 tgtgatactgtttgagagagcttatgaaat-agtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaac 148  Q
    ||||| ||| ||||||||||||| |||||| | ||| |||||||| ||||||||| ||| | |||||||||| || |||||  ||||| | || ||||||    
T  9700108 tgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctgttttcaccttattttcataagctctcttgaataacatatgaaaac 9700009  T
Q  149 ag 150  Q
    ||    
T  9700008 ag 9700007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 40279655 - 40279708
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagct 139  Q
    ||||||||||||| || | ||||||| |||||||||||||||||| | ||||||    
T  40279655 tgacatgttcatatgcagtttttagcatattttcacaaactctcctggatagct 40279708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 12972918 - 12972882
Alignment:
Q  96 ataagctggttttagcttattttcacaaactctccag 132  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  12972918 ataagctggttttggcttattttcataaactctccag 12972882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 21130730 - 21130653
Alignment:
Q  39 acataaatgcatgtgatactgtttgagagagcttat-gaaatagtttgtgacatgttcataagctggttttagcttattt 117  Q
    |||||||| | ||||| ||||||||||||||||||| ||||||| || |||||||| |||  |||| ||| |||||||||    
T  21130730 acataaatacttgtgagactgtttgagagagcttatggaaatagcttttgacatgtccat--gctgttttgagcttattt 21130653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 43052716 - 43052760
Alignment:
Q  76 aaatagtttgtgacatgttcataagctggttttagcttattttca 120  Q
    |||||||||  ||||| |||||||| |||||||||||||||||||    
T  43052716 aaatagtttaggacatcttcataagttggttttagcttattttca 43052760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 5759538 - 5759639
Alignment:
Q  50 tgtgatactgtttgagagagcttatg-aaatagtttgtgacatgttcataagctg-gttttagcttattttcacaaactctccagaatagcttaagaaaa 147  Q
    ||||| |||||||| ||||||||||| ||| || ||  ||||||| |||||| || |||| ||||||||||||||||| ||||||||||||||| |||||    
T  5759538 tgtgagactgtttgggagagcttatggaaacagctta-gacatgtccataagttgtgtttcagcttattttcacaaaccctccagaatagcttatgaaaa 5759636  T
Q  148 cag 150  Q
    |||    
T  5759637 cag 5759639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 1494414 - 1494480
Alignment:
Q  55 tactgtttgagagagcttatg-aaatagtttgtgacatgttcataagctggttttagcttattttca 120  Q
    ||||||||||||||||||||| ||| || || |||||||| ||||| ||| ||||||||||||||||    
T  1494414 tactgtttgagagagcttatgaaaacagcttatgacatgtccataaactgtttttagcttattttca 1494480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 19333325 - 19333389
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    |||||||||||||||||| | | |||||||||||| || |||||||  |||| ||||||||||||    
T  19333325 tgacatgttcataagctgttctcagcttattttcataagctctccaatatagtttaagaaaacag 19333389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 7103482 - 7103543
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaa 147  Q
    |||||| | |||||| || ||||||||||||||||||||||||| |  |||||||| |||||    
T  7103482 tgacatatccataagttgtttttagcttattttcacaaactctctaagatagcttatgaaaa 7103543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 15120283 - 15120190
Alignment:
Q  57 ctgtttgagagagcttatg-aaatagtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaaca 149  Q
    ||||||| ||||||||||| ||| |  || |||||||||||| ||||| ||| |||||||||| | || |||||||  |||||||| |||||||    
T  15120283 ctgtttgggagagcttatggaaacaacttatgacatgttcattagctgttttaagcttattttgataagctctccatgatagcttacgaaaaca 15120190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 19629423 - 19629370
Alignment:
Q  96 ataagctggttttagcttattttcacaaactctccagaatagcttaagaaaaca 149  Q
    |||||||| ||| | |||||||||| ||||||||||| |||||||| |||||||    
T  19629423 ataagctgatttcaacttattttcataaactctccagtatagcttatgaaaaca 19629370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 27237893 - 27237938
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctcca 131  Q
    |||||||| ||||||||| ||||||||||||| || ||||||||||    
T  27237893 tgacatgtacataagctgtttttagcttatttccataaactctcca 27237938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 4350789 - 4350725
Alignment:
Q  58 tgtttgagagagcttatgaaat-agtttgtgacatgttcataagctggttttagcttattttcac 121  Q
    ||||||||||| |||||||||  || || |||||||||||||| ||| |||||| ||||||||||    
T  4350789 tgtttgagagaacttatgaaaacagcttatgacatgttcataaactgattttaggttattttcac 4350725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 6993687 - 6993787
Alignment:
Q  50 tgtgatactgtttgagagagcttatg-aaatagtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaac 148  Q
    ||||| ||||||||| ||| |||||| |||||| || || ||||| ||||||    |||||||||||||||| || ||||| || |||||||| ||||||    
T  6993687 tgtgagactgtttgatagaacttatgtaaatagcttatggcatgtccataagtcatttttagcttattttcataagctctcaagcatagcttatgaaaac 6993786  T
Q  149 a 149  Q
    |    
T  6993787 a 6993787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 10567127 - 10567063
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    ||||||| ||||||| || ||| |||| |||||||||| ||||||||||||| ||| | ||||||    
T  10567127 tgacatgatcataagttgttttcagctaattttcacaagctctccagaatagtttatggaaacag 10567063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 28641751 - 28641802
Alignment:
Q  88 acatgttcataagctggttttagcttattttcacaaactctccagaatagct 139  Q
    |||||||||||||||| |||||||||||||||| || |||| ||||||||||    
T  28641751 acatgttcataagctgtttttagcttattttcataagctctgcagaatagct 28641802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 821896 - 821835
Alignment:
Q  60 tttgagagagcttatga-aatagtttgtgacatgttcataagctggttttagcttattttca 120  Q
    |||| |||||||||||  ||||| || |||||||||||||||||| ||| ||||||||||||    
T  821896 tttgggagagcttatgggaataggttatgacatgttcataagctgttttcagcttattttca 821835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 4420713 - 4420652
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaa 147  Q
    |||||||||||||||||| ||| ||||||||| || || |||||||  |||||||| |||||    
T  4420713 tgacatgttcataagctgttttcagcttatttccataagctctccaagatagcttaggaaaa 4420652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 3044259 - 3044324
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacagg 151  Q
    |||||||||||||||||| ||| | |||||||||| || ||||||||  |||| ||||||||||||    
T  3044259 tgacatgttcataagctgttttcaacttattttcataagctctccaggttagcataagaaaacagg 3044324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 21574591 - 21574515
Alignment:
Q  56 actgtttgagagagcttatgaaat-agtttgtgacatgttcataagctggttttagcttattttcacaaactctcca 131  Q
    |||||||| ||||||||||||||  |  || |||||||||||||||||| ||||||||||||| || || |||||||    
T  21574591 actgtttgggagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctctcca 21574515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 24785275 - 24785212
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaaca 149  Q
    ||||||||||||||| || ||||||||||||| || || ||||| || |||||||| |||||||    
T  24785275 tgacatgttcataagttgtttttagcttatttacataagctctcgaggatagcttatgaaaaca 24785212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 20669242 - 20669178
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    |||||||||||||||||| |||  |||||||| || || |||||||  |||||||| ||||||||    
T  20669242 tgacatgttcataagctgttttccgcttatttacataagctctccaagatagcttatgaaaacag 20669178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 54180780 - 54180844
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    |||||||| |||||| || |||||||||||||  | || ||||||| ||||||||| ||||||||    
T  54180780 tgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaacag 54180844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 4622163 - 4622118
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctcca 131  Q
    |||||||| ||||||||| ||||||||||||||||||| |||||||    
T  4622163 tgacatgtccataagctgtttttagcttattttcacaagctctcca 4622118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 6292563 - 6292502
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaa 147  Q
    |||||||||||||||||| ||| |||||||||||| || ||||||| ||||| ||| |||||    
T  6292563 tgacatgttcataagctgttttcagcttattttcataagctctccaaaatagtttacgaaaa 6292502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 11639395 - 11639480
Alignment:
Q  66 agagcttatgaaat-agtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    |||||||||||||  || || |||||||| ||||||||| |||||||||||||||| || ||||| |||||| |||| | ||||||    
T  11639395 agagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctctagaataacttatgcaaacag 11639480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 1565535 - 1565599
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    |||||||| ||||||||| ||| ||||||||||||  | ||||||| ||||| ||||||||||||    
T  1565535 tgacatgtgcataagctgttttcagcttattttcatgagctctccaaaatagattaagaaaacag 1565599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 37593684 - 37593744
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaa 146  Q
    |||||||||||||||||| ||| |||||||||||| || |||| || ||||||||| ||||    
T  37593684 tgacatgttcataagctgttttcagcttattttcataagctcttcaaaatagcttatgaaa 37593744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 4482033 - 4481966
Alignment:
Q  54 atactgtttgagagagcttatgaaat-agtttgtgacatgttcataagctggttttagcttattttca 120  Q
    ||||||||||||||| |||||||||  |  || | |||||||||||||||| ||||||||||||||||    
T  4482033 atactgtttgagagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattttca 4481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 10199398 - 10199469
Alignment:
Q  76 aaatagtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaa 147  Q
    |||||| || ||||||||||||||| || ||| |||||||||||| || ||||| | ||||||||| |||||    
T  10199398 aaatagcttatgacatgttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaa 10199469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 25479671 - 25479588
Alignment:
Q  67 gagcttatgaaa-tagtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaaca 149  Q
    |||||||||||| ||| || |||||||||||| || || ||| |||||||||||| || ||||| || |||||||| |||||||    
T  25479671 gagcttatgaaaatagattatgacatgttcattagttgttttcagcttattttcataagctctctaggatagcttatgaaaaca 25479588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 44422800 - 44422714
Alignment:
Q  56 actgtttgagagagcttatgaaa-tagtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagctta 141  Q
    ||||| || |||||||||||||| ||| || |||||||| |||||||||  |  |||||||||||| || |||||||| ||||||||    
T  44422800 actgtctgggagagcttatgaaaatagcttatgacatgtccataagctgactacagcttattttcataagctctccaggatagctta 44422714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 7262518 - 7262579
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaa 147  Q
    |||||||||||||||||| ||| | ||||||| ||||| |||| ||| |||||||| |||||    
T  7262518 tgacatgttcataagctgttttcaccttatttccacaagctcttcaggatagcttatgaaaa 7262579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 11941371 - 11941298
Alignment:
Q  49 atgtgatactgtttgagagagcttatgaaa-tagtttgtgacat-gttcataagctggttttagcttattttca 120  Q
    |||||| |||||||| |||||||||||||| ||| || | |||| |||||||||||| ||| ||||||||||||    
T  11941371 atgtgagactgtttgggagagcttatgaaaatagcttataacattgttcataagctgttttcagcttattttca 11941298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 31517740 - 31517785
Alignment:
Q  86 tgacatgttcataagctggttttagcttattttcacaaactctcca 131  Q
    |||||||||||||||||| ||| |||||||||||| || |||||||    
T  31517740 tgacatgttcataagctgttttcagcttattttcataagctctcca 31517785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 45975753 - 45975696
Alignment:
Q  93 ttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    ||||||||||| ||| |||||||||||| ||| ||||||  |||||||| ||||||||    
T  45975753 ttcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaacag 45975696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 9604 - 9671
Alignment:
Q  54 atactgtttgagagagcttatgaaat-agtttgtgacatgttcataagctggttttagcttattttca 120  Q
    ||||||||||||||| |||||||||  |  || | |||||||||||||||| ||||||||||||||||    
T  9604 atactgtttgagagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattttca 9671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 39907965 - 39908040
Alignment:
Q  56 actgtttgagagagcttatgaaatagtttgtgacatgttcataagctggttttagcttattttcacaaactctcca 131  Q
    |||| ||||||||||||||| || |  || |||||||| ||||||||||||| | ||||||| ||||| |||||||    
T  39907965 actgcttgagagagcttatggaacatgttatgacatgtccataagctggtttcatcttatttccacaagctctcca 39908040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 20526554 - 20526452
Alignment:
Q  50 tgtgatactgtttgagagagcttatgaaat-agtttgtgacatgtt-cataagctggttttagcttattttcacaaactctccagaatagcttaagaaaa 147  Q
    ||||| ||||||||||||| |||||||||  ||||| | |||| || | ||||||| ||||||||||||||||  |  |||||| ||||||||| |||||    
T  20526554 tgtgagactgtttgagagaacttatgaaaacagtttatcacatttttcgtaagctgtttttagcttattttcattagttctccaaaatagcttatgaaaa 20526455  T
Q  148 cag 150  Q
    |||    
T  20526454 cag 20526452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 7244779 - 7244686
Alignment:
Q  58 tgtttgagagagcttatg-aaatagtttgtgacatgttcataagctggttttagcttattttcacaaactctccagaatagcttaagaaaacag 150  Q
    ||||||| |||||| ||| ||| | ||| ||||||| ||||||| || ||| |||||||||||| || |||||||  |||||||| ||||||||    
T  7244779 tgtttgaaagagctgatggaaacaatttatgacatgctcataagttgttttcagcttattttcataagctctccaatatagcttatgaaaacag 7244686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 36598327 - 36598387
Alignment:
Q  58 tgtttgagagagcttatg-aaatagtttgtgacatgttcataagctggttttagcttattt 117  Q
    |||||||||||||||||| ||| |  || |||||||||||||||||| ||| |||||||||    
T  36598327 tgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttattt 36598387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 39506003 - 39505963
Alignment:
Q  109 agcttattttcacaaactctccagaatagcttaagaaaaca 149  Q
    ||||||||| || |||||||||||||||||||| |||||||    
T  39506003 agcttatttccataaactctccagaatagcttatgaaaaca 39505963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University