View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_88 (Length: 259)
Name: NF11928_low_88
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 36375251 - 36375499
Alignment:
| Q |
1 |
tcttgtcatgggctattcctcatttttagccttaatgagaacagaagatnnnnnnnnntcacacagaaagcgcacggctaaagcattgagggaaagtccc |
100 |
Q |
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| T |
36375251 |
tcttgtcatgggctattcctcatttttagccttaatgagaacagaagataaaaaaaattcacacagaaagcgcacggctaaagcattgagggaaagtccc |
36375350 |
T |
|
| Q |
101 |
ggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttgaggaagtgcttaatggatctaccagcagcattgagaattttacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36375351 |
ggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttgaggaagtgcttaatggatctaccagcagcattgagaattttacttt |
36375450 |
T |
|
| Q |
201 |
ctggcactttgtttcaaaacaattttggggaatacttcaacactctctg |
249 |
Q |
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| T |
36375451 |
ctggcactttgtttcaaaacaattttggggaatacttcaacactctctg |
36375499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 60 - 240
Target Start/End: Complemental strand, 8844697 - 8844517
Alignment:
| Q |
60 |
cacacagaaagcgcacggctaaagcattgagggaaagtcccggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttgaggaa |
159 |
Q |
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| T |
8844697 |
cacacagaaagtacatggcgaaaactttgcgagaaagccctggaatcttgatacttgatgaaggtcacaatcctagaagcacaaaatcaaggttgaggaa |
8844598 |
T |
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| Q |
160 |
gtgcttaatggatctaccagcagcattgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaa |
240 |
Q |
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| T |
8844597 |
atgcttaatggaacttccaacagaattgaggatattactttctggcactttgtttcagaacaatttcggtgaatatttcaa |
8844517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 8823187 - 8823354
Alignment:
| Q |
76 |
ggctaaagcattgagggaaagtcccggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttgaggaagtgcttaatggatcta |
175 |
Q |
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||||||| ||||||| |||| || ||| ||||||||||||| || | | ||||||||||| || | ||||| ||| | ||| ||||||||||| || |
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| T |
8823187 |
ggctaaaacattgagagaaatccctggaatcttgatacttgacgaagcttataatcctagaagcactaaatcaaggttaaagaaatgcttaatggaactt |
8823286 |
T |
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| Q |
176 |
ccagcagcattgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaacac |
243 |
Q |
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| T |
8823287 |
ccaatagaattaagaaaattactttctggcactctttttcagaacaatttttgtgaatatttcaacac |
8823354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 32250144 - 32249977
Alignment:
| Q |
76 |
ggctaaagcattgagggaaagtcccggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttgaggaagtgcttaatggatcta |
175 |
Q |
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||||||||||||||| ||||| || ||| |||||||||||||||| ||||||||||||||||| || | ||||| | ||||||| || |||||| | || |
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| T |
32250144 |
ggctaaagcattgagagaaagccctggaatcttgatacttgatgaaggacacaatcctagaagcactaaatcaaggctgaggaaatgtttaatgaaactt |
32250045 |
T |
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| Q |
176 |
ccagcagcattgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaacac |
243 |
Q |
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||| ||| ||||||||| || || |||||||| |||||||| |||||||| | ||||| |||||||| |
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| T |
32250044 |
ccaacagaattgagaatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacac |
32249977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 32184532 - 32184652
Alignment:
| Q |
105 |
tcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttgaggaagtgcttaatggatctaccagcagcattgagaattttactttctgg |
204 |
Q |
| |
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|||||||||||||| | || |||| || | |||| || | ||||| ||||||||| | |||||| | || ||| ||| ||||||||| ||||||||||| |
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| T |
32184532 |
tcttgatacttgataaaggccacagtcatcgaagcactaaatcaaggttgaggaaatatttaatgaaacttccaacagaattgagaatattactttctgg |
32184631 |
T |
|
| Q |
205 |
cactttgtttcaaaacaattt |
225 |
Q |
| |
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||| |||||| | |||||||| |
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| T |
32184632 |
cacattgttttagaacaattt |
32184652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 252
Target Start/End: Complemental strand, 35959638 - 35959472
Alignment:
| Q |
86 |
ttgagggaaagtcccggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttgaggaagtgcttaatggatctaccagcagcat |
185 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||| || ||||| ||||||||||||| ||||| |||| | || || || ||| | | | | | | || |
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| T |
35959638 |
ttgagggaaagtcctggactcttggtacttgatgaaggtcacaaccctagaagtaccaaatcaaggttgcgaaaatgtttgatgaaagtgcaaaccgaat |
35959539 |
T |
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| Q |
186 |
tgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaacactctctgctt |
252 |
Q |
| |
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||||||| || ||||| || |||||||||||||| ||||| | ||||||||||||||||| ||||| |
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| T |
35959538 |
tgagaatattgctttccggtactttgtttcaaaataatttctgcgaatacttcaacactctatgctt |
35959472 |
T |
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