View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11928_low_89 (Length: 257)
Name: NF11928_low_89
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11928_low_89 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 24303823 - 24303604
Alignment:
| Q |
22 |
ccctagccaaactaatttaatgtgttttgagtcctttaattttaatataaatcatggtattagaacaaccaagacatctcattaaagttatcaaagttca |
121 |
Q |
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| T |
24303823 |
ccctagccaaactaacttaatgtgttttgagtccttt-----taatataaatcatggtattaggacaaccaagacatctcattaaagttatcgaagttca |
24303729 |
T |
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| Q |
122 |
agaatcaagttgaataaagaatatgtatacnnnnnnnnttctaggaaattccgtccaaaatctcaagctcatatcaatgatgaaaatctgatgaaggatg |
221 |
Q |
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| T |
24303728 |
agaatcaagttgaataaagaatatgtagacaaatttttttttagggaattccgtcccaaatctcaagctcatatcaatgatgaaaatctgatgaaggatg |
24303629 |
T |
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| Q |
222 |
aagaaaacaaaggaaatcgtctctg |
246 |
Q |
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| T |
24303628 |
aagaaaacaaaggaaatcgcctctg |
24303604 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 10572020 - 10572075
Alignment:
| Q |
186 |
aagctcatatcaatgatgaaaatctgatgaaggatgaagaaaacaaaggaaatcgt |
241 |
Q |
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| T |
10572020 |
aagctcatatcaaggatgaaaagcacatgaagtatgaagaaaacaagggaaatcgt |
10572075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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