View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11928_low_95 (Length: 245)

Name: NF11928_low_95
Description: NF11928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11928_low_95
NF11928_low_95
[»] chr2 (2 HSPs)
chr2 (19-245)||(39705964-39706190)
chr2 (70-155)||(11620245-11620330)
[»] chr1 (9 HSPs)
chr1 (19-245)||(49063857-49064083)
chr1 (18-245)||(49048805-49049032)
chr1 (75-155)||(47840574-47840654)
chr1 (70-155)||(48005363-48005448)
chr1 (70-155)||(49045520-49045605)
chr1 (70-155)||(2540802-2540887)
chr1 (84-157)||(47830499-47830572)
chr1 (81-155)||(47825780-47825854)
chr1 (28-60)||(47840503-47840535)
[»] chr3 (2 HSPs)
chr3 (18-238)||(9757401-9757621)
chr3 (70-155)||(9761229-9761314)
[»] scaffold0121 (2 HSPs)
scaffold0121 (167-245)||(39155-39233)
scaffold0121 (70-155)||(35016-35101)
[»] chr7 (1 HSPs)
chr7 (70-155)||(22650566-22650651)
[»] chr8 (1 HSPs)
chr8 (75-155)||(16776357-16776437)
[»] chr5 (1 HSPs)
chr5 (85-155)||(19988370-19988440)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 39706190 - 39705964
Alignment:
Q  19 gaagcgttgccaacaaaaaatggaagagtttgagtagtagcatgctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttgat 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39706190 gaagcgttgccaacaaaaaatggaagagtttgaatagtagcatgctgaattacaagtttcttaagctcctccaaagccttcttgaataattcaagttgat 39706091  T
Q  119 ccctattcatactatcagccggacaagcccaccaaaacttagcctgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccag 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  39706090 ccctattcataccatcagccggacaagcccaccaaaacttagcctgggtttccttgtgcaaattgctcagctcatcaccaatcttcttctcagcctccag 39705991  T
Q  219 tgtgctgttgatttgagtcagctgagc 245  Q
    |||||||||||||||||||||||||||    
T  39705990 tgtgctgttgatttgagtcagctgagc 39705964  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 11620330 - 11620245
Alignment:
Q  70 acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa 155  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||||  |||||||||| | |||| | |||| ||||||||||||    
T  11620330 acaagtttcttaagctcatccagagccttcttgaataattcaagttgggccctattcatcccatcaacgggaccagcccaccaaaa 11620245  T

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Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 49064083 - 49063857
Alignment:
Q  19 gaagcgttgccaacaaaaaatggaagagtttgagtagtagcatgctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttgat 118  Q
    |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||    
T  49064083 gaagtgttgccaacaaaaaatggaagagttcgagtagcagcatgctgaattacaagtttcttaagctcctccaaagctttcttaaatatttcaagttgat 49063984  T
Q  119 ccctattcatactatcagccggacaagcccaccaaaacttagcctgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccag 218  Q
    |||||||||| | |||| |   |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  49063983 ccctattcatcccatcaacaacacaagcccaccaaaacttagcctcagtttccttgtgcaaattgctcagctcatcaccaatcttcttctcggcatccaa 49063884  T
Q  219 tgtgctgttgatttgagtcagctgagc 245  Q
     ||| | ||||||||||||||||||||    
T  49063883 cgtgttattgatttgagtcagctgagc 49063857  T

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Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 49049032 - 49048805
Alignment:
Q  18 agaagcgttgccaacaaaaaatggaagagtttgagtagtagcatgctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttga 117  Q
    |||||| |||||||||||||||||||||||| |||| |||||||| ||||||| || |||||||||||||||||| ||||| ||||||||||||||||||    
T  49049032 agaagcattgccaacaaaaaatggaagagttcgagttgtagcatgttgaattagaagtttcttaagctcctccaatgcctttttgaataattcaagttga 49048933  T
Q  118 tccctattcatactatcagccggacaagcccaccaaaacttagcctgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatcca 217  Q
    ||  ||||||| | |||| ||||||||||||||||||| |||||||  ||||||||| | |||| ||| |||||||| ||||||||||||||||||||||    
T  49048932 tctttattcattccatcaaccggacaagcccaccaaaaattagcctctgtttccttgagaaaatggctcagctcatcgccaatcttcttctcggcatcca 49048833  T
Q  218 gtgtgctgttgatttgagtcagctgagc 245  Q
      ||| ||||||||||||||| ||||||    
T  49048832 acgtgttgttgatttgagtcatctgagc 49048805  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 47840574 - 47840654
Alignment:
Q  75 tttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa 155  Q
    |||||||| |||| ||||||||||||||||||||||||||||  |||||||||| | |||| | |||| ||||||||||||    
T  47840574 tttcttaacctcccccaaagccttcttgaataattcaagttggaccctattcatcccatcaacgggaccagcccaccaaaa 47840654  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 48005448 - 48005363
Alignment:
Q  70 acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa 155  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||  |||| ||||| | |||| | |||| | ||||||||||    
T  48005448 acaagtttcttaagctcctccaaatcattcttgaataattcaagttggaccctgttcatcccatcaacgggaccatcccaccaaaa 48005363  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 49045605 - 49045520
Alignment:
Q  70 acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa 155  Q
    |||| |||||||||||||  ||||  |||||||||||||||||||||  |||||||||| | || |  ||||||||||||||||||    
T  49045605 acaagtttcttaagctccaacaaaatcttcttgaataattcaagttgtgccctattcatcccattaatcggacaagcccaccaaaa 49045520  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 2540887 - 2540802
Alignment:
Q  70 acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa 155  Q
    |||| |||||||| ||||||||||||||| ||||| | |||||||||  |||||||||| | |||| | | || ||||||||||||    
T  2540887 acaagtttcttaatctcctccaaagcctttttgaaaacttcaagttgggccctattcatcccatcaacggaaccagcccaccaaaa 2540802  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 47830499 - 47830572
Alignment:
Q  84 ctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaact 157  Q
    ||||||||||||||| ||||| |||||||||||  | |||||||| | |||| | |||| ||||||||||||||    
T  47830499 ctcctccaaagcctttttgaaaaattcaagttgggctctattcatcccatcaacaggaccagcccaccaaaact 47830572  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 47825780 - 47825854
Alignment:
Q  81 aagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa 155  Q
    |||| ||||||||||||| ||||| ||||||||||| |||||| |||| | || | | |||| ||||||||||||    
T  47825780 aagcgcctccaaagcctttttgaaaaattcaagttggtccctactcatcccattaacaggaccagcccaccaaaa 47825854  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 47840503 - 47840535
Alignment:
Q  28 ccaacaaaaaatggaagagtttgagtagtagca 60  Q
    |||||||||||||||||||||||||||| ||||    
T  47840503 ccaacaaaaaatggaagagtttgagtaggagca 47840535  T

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Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 9757401 - 9757621
Alignment:
Q  18 agaagcgttgccaacaaaaaatggaagagtttgagtagtagcatgctgaattacaaatttcttaagctcctccaaagccttcttgaataattcaagttga 117  Q
    |||||| |||||||||||||||||||||||| |||| |||||||| ||||||| || |||||||||||||||||| ||||| ||||||||||||||||||    
T  9757401 agaagcattgccaacaaaaaatggaagagttcgagttgtagcatgttgaattagaagtttcttaagctcctccaatgcctttttgaataattcaagttga 9757500  T
Q  118 tccctattcatactatcagccggacaagcccaccaaaacttagcctgggtttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatcca 217  Q
    ||| ||||||| | |||| ||||||||||||||||||| || ||||  ||||||||| |||||| ||| ||||||||  ||||||||||||| |||||||    
T  9757501 tccttattcattccatcaaccggacaagcccaccaaaaatttgcctccgtttccttgagcaaatggctcagctcatcgtcaatcttcttctcagcatcca 9757600  T
Q  218 gtgtgctgttgatttgagtca 238  Q
    ||||| |||||||||||||||    
T  9757601 gtgtgttgttgatttgagtca 9757621  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 9761229 - 9761314
Alignment:
Q  70 acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa 155  Q
    |||| |||||||||||||  || |  ||||||||||||||||||| || |||||||||| | || |  ||||||||||||||||||    
T  9761229 acaagtttcttaagctccatcacaatcttcttgaataattcaagtcgagccctattcatcccattaatcggacaagcccaccaaaa 9761314  T

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Target: scaffold0121 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 39233 - 39155
Alignment:
Q  167 tttccttgtgcaaattgcttagctcatcaccaatcttcttctcggcatccagtgtgctgttgatttgagtcagctgagc 245  Q
    |||||||| |||||||||| |||||||||||||| ||||||||||||| ||   || | ||||||||||||| ||||||    
T  39233 tttccttgcgcaaattgctcagctcatcaccaattttcttctcggcatgcatcatgttattgatttgagtcaactgagc 39155  T

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Target: scaffold0121; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 35101 - 35016
Alignment:
Q  70 acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa 155  Q
    |||| ||||||||||||| | |||  |||||||||||||||||||||| |||||||||| | | ||   |||||||||||||||||    
T  35101 acaagtttcttaagctccactaaaatcttcttgaataattcaagttgagccctattcatcccaccaattggacaagcccaccaaaa 35016  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 22650651 - 22650566
Alignment:
Q  70 acaaatttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa 155  Q
    |||| ||||||||||||| ||||   |||||||||||||||||| ||| || ||||||| | ||||  |||| |||||||||||||    
T  22650651 acaagtttcttaagctccaccaacatcttcttgaataattcaagctgagccttattcattccatcaatcggataagcccaccaaaa 22650566  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 16776357 - 16776437
Alignment:
Q  75 tttcttaagctcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa 155  Q
    |||||||  ||||||||||||||| ||||| |||||||||||  || ||||||| | |||| | |||| ||||||||||||    
T  16776357 tttcttagtctcctccaaagcctttttgaaaaattcaagttgggccatattcatcccatcaacgggaccagcccaccaaaa 16776437  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 19988440 - 19988370
Alignment:
Q  85 tcctccaaagccttcttgaataattcaagttgatccctattcatactatcagccggacaagcccaccaaaa 155  Q
    ||||||||||||||||||||| || |||||||  || ||||||| ||||||   ||||||| |||||||||    
T  19988440 tcctccaaagccttcttgaatgatccaagttggaccatattcatcctatcaaagggacaagtccaccaaaa 19988370  T

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